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Report for CCDS30342.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30342.1 Public Mus musculus X Fndc3c1 23 108 98 CCDS HistoryNCBI Gene:333564Re-query CCDS DB by CCDS ID:30342.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 30342.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039447.13 ENSMUSP00000038678.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039447.13Link to Ensembl Protein Viewer:ENSMUSP00000038678.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000039447Re-query CCDS DB by Protein ID:ENSMUSP00000038678
Original member Current member NCBI NM_001007580.1 NP_001007581.1 Accepted alive Link to Nucleotide Sequence:NM_001007580.1Link to Protein Sequence:NP_001007581.1Re-query CCDS DB by Nucleotide ID:NM_001007580Re-query CCDS DB by Protein ID:NP_001007581Link to BLAST:NP_001007581.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007581.1 1356 Q6DFV6 1356 100% 0 0

Chromosomal Locations for CCDS 30342.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 106420460 106420795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106421674 106421795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106424673 106424839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106425181 106425393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106425682 106425956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106431287 106431436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106432433 106432546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106432758 106432864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106433283 106433385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106433508 106433626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106434263 106434334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106434950 106435088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106436321 106436407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106437618 106437792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106437878 106437999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106438620 106438673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106439208 106439346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106442601 106442660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106444159 106444298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106444584 106444639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106445493 106446197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106447372 106447642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106449218 106449294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106472651 106472726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106473068 106473181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106473831 106473908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4071 nt):
ATGGAACATCAACTTTCACCCATTCTTTCTGAAATACCTCCAACAGTGCCAGTCATCAATGGAGAGCCCA
TGTGCCCTGTGGAGAATTATCTTCTGGACCCTAATGCCATGGCGGTGTGTTCTAATCATTCACAGATTAT
GACTCAGCATAAGATGTATAACACCTGGACGTGTCCCCAATACTGGTCTCAAATTGTATTTGTTCAAGTT
AACCCTGGAGAAATCCTTACCATAAAGGCTGATGATGGCTCCATTCAGAACATTCAAGGTCCTGCAGATG
TACCTCTGATAGCACCAACTGGCAATTTGCCACCAATATACCTTCCTCCTGGTTACATGTCTCAGGTGGT
GGAAGAAAATGGAATTCAAAAAATTGTCATTGTACCTCAGACACTTGACTACCATGTGCCCATGACTGCT
CCTGTGCAGCAGCCCTTTGTAGCAGCACCATTGCTCACATACCCACAGGCCCCTCAACTTCTGTATTCTC
CAGTTCAAGGGGAAATCCCAGTACCTTCTTACATACAAGAACCACAGCAGATCCCGCCACTGCCACTTCT
ACCCCCACTGCCACTGCTCCCACCAGCGGCAACATTTCTATTCCAGGAACATCTTGAAACCTATCCTCAA
GGAAGAGTGAATCATAACCAATTTGATGAGAGGACTGTAAAGATTGGAGAATATTCAAAGAAGAAGATAA
GAGATCGCCAACTTGGTGAACACAAGATCAACTCCACTTTTAGTGACACCACTTTGCTTCTCAACAAAGA
CATTGACATGCCTGCTCCTCCTGATAGTCTCTGTCCTTACACTGTGGATACTGCTCCAGGCACCAACACT
GATAACAGTACTTCAGACACTTACTCTCTGAATACTGTCTTAAACACTTGCACTATTGACAGTGCTCCAA
GAAACATGGCTGACAATATTCCAGACACTAACACTACTGACACAATCACTAGTTCTTCTGCTCATACCCC
AAGCATTTCTACCTCAAATGCTACTTTTTGCTCTGACAACAATAACAATATTACAGACTCTTCCATAAGT
AATTACAATCAAGTCACCTATGATGAAACTCACAAACCACCAGATGCTAAGAGTATTCCAAGCTGTACTT
CCCAAAGTGCTAGCAACCCTTCTGTCTCTGAAAATGCTCATAACCCCTCCTCGATAAATGATGGCCTCAG
ACCTTCTGATGTTGCCAGCATTTCTGAAAATGATCATGAAGAGACAGAGGCTAACATGGGAGCTGGAGAC
AATAAGCAGATATTAGGTGAAAACCAAAAGAAGAGTCAGTCGTCAAATGCATCACTGAAAGAACACAATA
CAGAGGACAGAACACAACCAGGTTGTTTCAACATTGAAAAACCTGTGGTTTCTAATATTCAAACCCGATC
TGCTACTGTTTCATGGACTCGGAAGAGTAATGAAAAATATGATATTAATTCTTCTATGACACATGAATTG
GCACTGTCCAGCAATGGTAAAAATGGAACCTATAAAAATATTTATACTGGTAATGGCGTTACTGTGGTCC
TACATGATCTACAACCTTGCATGGTCTACTTTTTAAGAGTAACAACCATAAGAAATGCAGAACACAGAAG
TGTGTCTGAAGTGGTTAGCTTCACAACACCAGGCTGTGAACCAGACCCTCCTCTTGCACCCACACTGATC
AGCAGAACCAAGAACAGCCTGAGTTTACAATGGAAAGCTTCCAATGATAATGGATCCAAAATAAGCAGCT
TTCTTTTGGAATGGGATGAGGGTAAAGGTGAAGACTTCAAAAGTTGTTACAGTGGACGCCTGAAACAGCA
CAAGCTTTTTAAACTGAACCCTTCAACAAAGTATTCCTTCAGATTAGCTGCCAAAAATGACTTTGGCTGC
AGCAATTTCAGTGAAACCGCAGTCTTCTATACATCAGGAAAGACCCCTCCAGCACCACTGCCACCTAAGT
TGAAAGAAGCAGGAATCTACAGTTTGTCTCTAGAGTGGTGTGCCCCAACAAACCCAAACCCAAATGACAC
TCTTACTTATGTGCTAGAGATGGAGGAAGCAAAATCTGGATTAGGTTTTAAACCTAAATACAATGGAGAA
GACCTCACCTGCACCATAAGAAATCTTCAAAGAAACACTATGTACAAGTTTCGGATTTTTGCCTACAATC
TGGAAGGAAGGAGCAACCCCAGTGGAGAAGTAAAATATACTACTCGTCCAGCTAGGCCTGGATGCCCTAA
TAAACCATATGTAGTGGGAACGATCCATGCACACCAAGTGACAATTGGATGGGACTTACCCAAAGACAAC
GGTGGAATGAACATCTCAAGTTACAGCCTAGAAGTTTGTGAAAATTCAGATAGTGCGAATCTCTGGAAAA
TAATCTACAGTGGTACTCGACAGGAATTTCTGTATGATGACCTCCAAGCAGCCACCACATATAAACTGAG
AGTCTTTTGCACGTCACCTGCAGGCCAAAGCCGTCCTTCAGATGTATTGACAATTCAGACGCCTACTCTT
CCTCCCGAGTCTTGCCGTTCACAGCCCTTACGTGGTAAAACCAAGAGCAAGGATGCCAACCTTCCTGACA
ATCGTTCTGTTAATGGGAAGCCGGAAGCACATGTGCGTGGCAAAAAAGCAAAAGGTCCTCATCAGGACAG
AAAGGTGCACCCCAGCTCTGAAAAGAAATGTGCACTTGGATCTCAGTCAATGGAGTGTGGATCTGTACCA
GCCCGGCACCCTCCTTCTCAGTGTGGTACACCTGTGCTAACCTGCAAGGGTCCAACCTGTGTTATTGTCA
GTTGGGAAATTCCTAAATGCAATGGTGCTGAAATCATTGATTACCGACTGCAATGGGGACAAGTTGAAGA
TTCCATGCATTTGATTTACACTGGCCCTTGCTTGCGCTATGAAGTTAAAGGTCTTGTTCCTGCAACCACA
TACTTTTGCAGAGTACAGGCTGTGAATATAGTTGGGGTTGGAATGTTTGGAGGAACTGCAAAAGTGACTA
CACCTGGAACTGTCCCAGCAATGGTTCCAGTATTAAAAGAAGTTGAAAGCAAAGTGCCTGCCAAGCTGTC
ATCAACTTGCATAGCTATCCGCTGGGAGGAGCCAGACTGTCATGGCTCTCCTATCACTGGATATAACATT
GAATATGGAGATAAAAAAGTTGTGACTGTCAAAAGAATAACCGAGTATGTTCTGAAAGATCTACAACCTA
ATACTACATACAGAATCAGAATTCAAGCTATCAATCATTATGGACTAAGCCCTTTTAGCCCATCAATAAG
ATGCAAAACCAAACCACTACCACCAGAGCCTCCACAGCTTAATTGTGTGGTCTATGGACACCAGAGTCTC
AGACTCAAATGGGGCACTGTCTCAAGCAAAAAAACACTTGCCAATTTTATCAACTACAACGTACTAATGG
AAGATCGATCTGGCAGATTTTCTGTCATTTACCGTGGGCCGGATGTGACTCACAAAGTGCAAAAATTGAG
TGAGTATACAGAATACAAGTTTAAAATCCAGGCATGTAATGAAGCTGGGGAAGGACCAGAGTCTGACATC
TACACTTTCACTACTACAAAGTCCCCACCCACTGCACTGAAAGCACCAAAAGTACATCCACTGAATAACA
ACTCTTGTGAGATCAAATGGGAGTCTTTGGAGCCAATTAAAGGTGATCCCATTGTTTATTGTCTTCAAGT
CACCACCGGGAAAAAGGCTAATCAGATTTACAAAGGACCAAACACTTCCTTTTCCTTTTCCAACTATCAT
GCAAATTCACGCTACCGCTTCAAGGTCTGTGCAGGACGCCGATATGAAACCTCCAATGGTCTTCAAGAGC
TGTGGGGGCCATATAGTCCCAGTGCTCTTTTCTCAACTTATAAGCATCATTCAGGGCATGGCAAAGGCAG
TGGGAGTAAAGGAAAAGGCAACCATAATGACAAAGGTGAAAAGTGCAAGACAGAGATGAGTGATGATACC
TTCGTTCTTACCCTTCTGATAGGGTTCGCACTTATTGCAGTTTTGTGTGCTGTTGCCGTTCAATACCTCC
TGATCAATTAG

Translation (1356 aa):
MEHQLSPILSEIPPTVPVINGEPMCPVENYLLDPNAMAVCSNHSQIMTQHKMYNTWTCPQYWSQIVFVQV
NPGEILTIKADDGSIQNIQGPADVPLIAPTGNLPPIYLPPGYMSQVVEENGIQKIVIVPQTLDYHVPMTA
PVQQPFVAAPLLTYPQAPQLLYSPVQGEIPVPSYIQEPQQIPPLPLLPPLPLLPPAATFLFQEHLETYPQ
GRVNHNQFDERTVKIGEYSKKKIRDRQLGEHKINSTFSDTTLLLNKDIDMPAPPDSLCPYTVDTAPGTNT
DNSTSDTYSLNTVLNTCTIDSAPRNMADNIPDTNTTDTITSSSAHTPSISTSNATFCSDNNNNITDSSIS
NYNQVTYDETHKPPDAKSIPSCTSQSASNPSVSENAHNPSSINDGLRPSDVASISENDHEETEANMGAGD
NKQILGENQKKSQSSNASLKEHNTEDRTQPGCFNIEKPVVSNIQTRSATVSWTRKSNEKYDINSSMTHEL
ALSSNGKNGTYKNIYTGNGVTVVLHDLQPCMVYFLRVTTIRNAEHRSVSEVVSFTTPGCEPDPPLAPTLI
SRTKNSLSLQWKASNDNGSKISSFLLEWDEGKGEDFKSCYSGRLKQHKLFKLNPSTKYSFRLAAKNDFGC
SNFSETAVFYTSGKTPPAPLPPKLKEAGIYSLSLEWCAPTNPNPNDTLTYVLEMEEAKSGLGFKPKYNGE
DLTCTIRNLQRNTMYKFRIFAYNLEGRSNPSGEVKYTTRPARPGCPNKPYVVGTIHAHQVTIGWDLPKDN
GGMNISSYSLEVCENSDSANLWKIIYSGTRQEFLYDDLQAATTYKLRVFCTSPAGQSRPSDVLTIQTPTL
PPESCRSQPLRGKTKSKDANLPDNRSVNGKPEAHVRGKKAKGPHQDRKVHPSSEKKCALGSQSMECGSVP
ARHPPSQCGTPVLTCKGPTCVIVSWEIPKCNGAEIIDYRLQWGQVEDSMHLIYTGPCLRYEVKGLVPATT
YFCRVQAVNIVGVGMFGGTAKVTTPGTVPAMVPVLKEVESKVPAKLSSTCIAIRWEEPDCHGSPITGYNI
EYGDKKVVTVKRITEYVLKDLQPNTTYRIRIQAINHYGLSPFSPSIRCKTKPLPPEPPQLNCVVYGHQSL
RLKWGTVSSKKTLANFINYNVLMEDRSGRFSVIYRGPDVTHKVQKLSEYTEYKFKIQACNEAGEGPESDI
YTFTTTKSPPTALKAPKVHPLNNNSCEIKWESLEPIKGDPIVYCLQVTTGKKANQIYKGPNTSFSFSNYH
ANSRYRFKVCAGRRYETSNGLQELWGPYSPSALFSTYKHHSGHGKGSGSKGKGNHNDKGEKCKTEMSDDT
FVLTLLIGFALIAVLCAVAVQYLLIN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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