NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37128.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37128.2 Public Mus musculus 15 Apol10b 23 108 98 CCDS HistoryNCBI Gene:328561Re-query CCDS DB by CCDS ID:37128.2See the combined annotation on chromosome 15 in Sequence Viewer

Public Note for CCDS 37128.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and protein data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 37128.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089465.5 ENSMUSP00000086890.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089465.5Link to Ensembl Protein Viewer:ENSMUSP00000086890.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000089465Re-query CCDS DB by Protein ID:ENSMUSP00000086890
Original member Current member NCBI NM_177820.4 NP_808488.2 Accepted alive Link to Nucleotide Sequence:NM_177820.4Link to Protein Sequence:NP_808488.2Re-query CCDS DB by Nucleotide ID:NM_177820Re-query CCDS DB by Protein ID:NP_808488Link to BLAST:NP_808488.2

Chromosomal Locations for CCDS 37128.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 77584971 77585811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77588689 77588815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77592076 77592112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1005 nt):
ATGGCTAGAGCTTGGTGCTCAACAGACCTCAAGCAAGGAGTAGCTCGAAGTGTTGATGGAGTCGCTGATA
TTGTCACGGAAAAATTCTTGAAAACAGATCTGAGGAGCCTGATAACTGAAGATGGAGCCTGGAAGGCATT
TGAGGAAGCAGCAGAATTGTCAAGTGAGGAGGGAGCTATACTTCGTGATGCTCTGAAGGAGAGTTTAGCA
CAGGAGCCCTCAGATGAAAATGACGGACCTGAAAGGAAGCAGCAGAATGAGCGGTTTCTGCGAGAGTTTC
CTGAGTTGAAGAAGAAACTTGAGGACCACATCAGGAAGCTCCGAGACCTGGCTGATCATCTTGACCAGGT
GCACAAGGACTGCACCATCTCCAATGTGGTGTCCACCTTTGCTAGTGCTATCTCTGGAGCCATGGGCCTT
CTTGCTTTGGGTCTGGTACCCTTTACAGAAGGGGTCAGTCTGTTACTCTCAGCAGCCTCTGTGGGTCTGG
GGGAGACAGCATCCGTGACTGGTCTTACGACCACCGTTGTGGAAGAATCAATGAGACTCTCAGATGAATC
TGAAGCCAGTCGCCTGGTTAGAGCCAGCATGAATGTATTTGAAGAGATTGTAAAGATCATGTCTAAGATC
ACATTCAAGCTTTTATTTACAGCTGTGGGATTAGTCCCTGCAGTCAAAATCCTCAGGGATCACATCCGAG
CCATGAGGAGAGCGAGAATCATCATTTTCCCTAGAGAAGAGGCCAGGAACCTCACATCCAGTGAAAGAAG
CTCTGTGCAGGGTGTTCTCCCAATGACCAGAGGAGCCAGGCTTAGAGCAGTAGGGTTTACAAGTTTGTTC
CTTGCGTGGGATGTGTATGACTTTGTGAAGCAATCAAAAGATCTGTATAATGGGGCAAAAACAGAGTCAG
CTGGAGCACTGCGGGAACTGGCTCACAAGCTGGAGGAGAAGCTGCAGGTATTCGAGCAGATATATAAGGC
TCTGCAGTCAGACCTGCCTCACTGA

Translation (334 aa):
MARAWCSTDLKQGVARSVDGVADIVTEKFLKTDLRSLITEDGAWKAFEEAAELSSEEGAILRDALKESLA
QEPSDENDGPERKQQNERFLREFPELKKKLEDHIRKLRDLADHLDQVHKDCTISNVVSTFASAISGAMGL
LALGLVPFTEGVSLLLSAASVGLGETASVTGLTTTVVEESMRLSDESEASRLVRASMNVFEEIVKIMSKI
TFKLLFTAVGLVPAVKILRDHIRAMRRARIIIFPREEARNLTSSERSSVQGVLPMTRGARLRAVGFTSLF
LAWDVYDFVKQSKDLYNGAKTESAGALRELAHKLEEKLQVFEQIYKALQSDLPH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH