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Report for CCDS26013.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26013.1 Public Mus musculus 12 Dcaf5 23 108 98 CCDS HistoryNCBI Gene:320808Re-query CCDS DB by CCDS ID:26013.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26013.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054145.7 ENSMUSP00000052755.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054145.7Link to Ensembl Protein Viewer:ENSMUSP00000052755.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000054145Re-query CCDS DB by Protein ID:ENSMUSP00000052755
Original member Current member NCBI NM_177267.5 NP_796241.3 Accepted alive Link to Nucleotide Sequence:NM_177267.5Link to Protein Sequence:NP_796241.3Re-query CCDS DB by Nucleotide ID:NM_177267Re-query CCDS DB by Protein ID:NP_796241Link to BLAST:NP_796241.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796241.3 946 Q80T85 946 100% 0 0

Chromosomal Locations for CCDS 26013.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 80338510 80340276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80348320 80348447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80364004 80364070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80376518 80376731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80397653 80397782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80398769 80398908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80399949 80399985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80404555 80404698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80436185 80436398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2841 nt):
ATGAAGAGGAGAGCTGGCCTGGGGGGCAGCATGAGGTCAGTGGTGGGCTTCTTGTCCCAGCGGGGCTTGC
ATGGGGACCCCCTGCTCACTCAGGACTTTCAGAGGAGACGCCTGCGGGGCTGCAGAAACCTCTACAAGAA
GGACCTTCTCGGCCACTTCGGCTGTGTCAATGCCATTGAATTCTCCAACAATGGAGGCCAGTGGCTGGTC
TCAGGAGGAGACGACCGCCGAGTTCTGCTATGGCACATGGAACAAGCTATCCATTCCAGGGTCAAACCCA
TACAGCTGAAAGGGGAACACCATTCCAACATTTTCTGCCTGGCTTTCAACAGTGGGAACACCAAAGTATT
CTCTGGAGGAAATGATGAGCAAGTTATCCTCCATGATGTTGAAAGCAGTGAGACCCTGGATGTGTTTGCT
CATGAAGATGCAGTATATGGCTTGTCAGTGAGCCCCGTGAATGACAACATTTTTGCCAGCTCTTCAGATG
ATGGCCGGGTTCTCATTTGGGATATCCGGGAGTCTCCCCATGGAGAGCCCTTCTGCCTGGCAAACTATCC
GTCAGCCTTTCACAGCGTCATGTTTAACCCCGTGGAGCCCCGGCTATTGGCCACAGCCAATTCAAAGGAA
GGAGTGGGACTCTGGGACATTAGAAAGCCTCAGAGTTCTCTCCTGCGCTATGGTGGCAACCTGTCTCTCC
AGAGTGCCATGAGTGTGCGATTCAACAGCAATGGGACCCAACTCCTGGCACTGCGGCGCCGCCTGCCCCC
TGTCCTCTATGACATCCACTCCCGCCTGCCAGTGTTCCAGTTTGACAATCAGGGTTACTTCAACTCATGC
ACTATGAAAAGCTGCTGCTTTGCCGGGGATCGTGACCAGTACATCCTTTCAGGCTCCGATGACTTCAACT
TGTACATGTGGAAGATCCCTGCAGATCCAGAGGCAGGTGGCATTGGCAGGGTGGTCAATGGAGCCTTCAT
GGTGCTGAAAGGGCATCGGTCCATCGTGAACCAGGTTCGGTTTAACCCCCACACCTATATGATCTGCTCT
TCTGGCGTAGAAAAGATTATCAAGATCTGGAGCCCATACAAGCAGCCAGGATGTACAGGTGACCTGGATG
GTCGGATTGAAGATGACTCCCGCTGCCTCTACACCCATGAGGAGTACATTAGCCTTGTTCTGAACAGTGG
AAGTGGCCTGTCCCACGACTACGCTAACCAGTCAGTCCAGGAGGACCCTCGGATGATGGCTTTCTTTGAC
TCCTTGGTGCGTCGTGAAATTGAGGGCTGGAGCTCAGACTCGGACAGCGACCTCAGCGAGAGCACTATCC
TCCAGCTGCACGCAGGGGTCAGTGAGCGCTCAGGCTACACTGACTCGGAATCTTCAGCCTCACTGCCCCG
CTCCCCACCTCCCACAGTAGACGAGTCTGCGGACAACGCCTTCCACCTGGGGCCCCTGCGCGTCACTACC
ACAAATGCAGTGGCGTCAACCCCAGCAACGCCAACATGTGAGGATGCGTCCTCTCGGCAGCAGCGCCTGT
CTGCTCTGAGGCGTTACCAGGACAAACGCCTCTTGGCCCTGTCCAATGAGTCCGATTCTGAAGAGAATGT
TTGTGAGGCTGAACTGGACACAGATCTCTTCCCTCGGCCACGGTCGCCCAGCCCTGAGGATGGGTCCAGC
AGTCCCAGCAGCTCCACCAGCTCTGAGGATGAAGAGGAACTGAACCAACGCCGAGCCACCACCCGGCAGC
GGAACGCCATGCGGAGGCGACAAAAGACAGCCCGGGATGAGCGGCCCACTGGTCCAGCCAAGTCCACCAA
CACCTACATTGGAGAGGACAATTACGACTACCCACAGATCAAGGTGGATGACCTCTCCCCCTCCCCAGAC
TCCTCCCCTGAGCGGAGCGCTTCCACTCTGGATGTTCAGCCAAGCCGGGCACCACCAGCCGCCAACATGG
AATCAGTTGAGCGTAAGATTTACAAAGCTTACAAATGGCTCCGCTGCTCCTATATCTCTTACTCGAATAA
CAAAGATGGGGAAACCTCCTTAATGGCAGAGGAGGCAGATGAAGGAAGAGCAGGAACCAGCCACAAAGAC
AACCCAACCCCTTCTTCCAGTAAGGAAGCCTGTCTAACAGCCACAGCCCAGAGGGACCAGGACCTGCCCT
CTGAAGGCTGCAGCAGTGATGCTTGTAAAGAAGGGACTTCCGCCGGAAATCCCAACAGCGGTGCAGGCCA
TGAGCATAGTAGCCATCCTTGGGCAGAGGTGCCAGAGGGCACCTCTCAGGACACTAACAACAGTGGCCCA
CTAGAACACTCTTTTGAAACCAAGAAGCTCAATGGAAAGGCTCTGAGCAAGGCCCTGAGCAGTCGGGCTG
AGGAGCCACCCGCCTCTCCTGGCCCCAAGGCATCGGGCTCTACTCTCAACAGTGCATCTGGCAACTGTCC
CAGGACCCAGTCTGATGACAGTGAGGAGAGGAGCCTTGACACTGTCTGTGCCAACCACAACAATGGACGC
TTGCACCCCAGGCCCCTGCACCCCCACAACAATGGGCAGAGCTCTGGGGAGCTGGAGACAGTGGCCTGCT
CTTCCCCAGGACACCTAGACACTGACCATGATAGCCCATCCCTGACAGGGACATTTCTACACAAAGATTG
TTGTGGGTCGGAAATGGCCTGTGAGACCCCAAGTGCTGGAATGAGAGAGGACCCCCCTGACCCTTCAGGC
CTGGACAGCAGCAAGGTTGTTCATGGCCAAAGCGGCCTCAAAAGGCACCGAATTGAATTGGAAGATACAG
AGTCAGAGAATTCCTCCTCAGAGAAGAAATTAAAAACATGA

Translation (946 aa):
MKRRAGLGGSMRSVVGFLSQRGLHGDPLLTQDFQRRRLRGCRNLYKKDLLGHFGCVNAIEFSNNGGQWLV
SGGDDRRVLLWHMEQAIHSRVKPIQLKGEHHSNIFCLAFNSGNTKVFSGGNDEQVILHDVESSETLDVFA
HEDAVYGLSVSPVNDNIFASSSDDGRVLIWDIRESPHGEPFCLANYPSAFHSVMFNPVEPRLLATANSKE
GVGLWDIRKPQSSLLRYGGNLSLQSAMSVRFNSNGTQLLALRRRLPPVLYDIHSRLPVFQFDNQGYFNSC
TMKSCCFAGDRDQYILSGSDDFNLYMWKIPADPEAGGIGRVVNGAFMVLKGHRSIVNQVRFNPHTYMICS
SGVEKIIKIWSPYKQPGCTGDLDGRIEDDSRCLYTHEEYISLVLNSGSGLSHDYANQSVQEDPRMMAFFD
SLVRREIEGWSSDSDSDLSESTILQLHAGVSERSGYTDSESSASLPRSPPPTVDESADNAFHLGPLRVTT
TNAVASTPATPTCEDASSRQQRLSALRRYQDKRLLALSNESDSEENVCEAELDTDLFPRPRSPSPEDGSS
SPSSSTSSEDEEELNQRRATTRQRNAMRRRQKTARDERPTGPAKSTNTYIGEDNYDYPQIKVDDLSPSPD
SSPERSASTLDVQPSRAPPAANMESVERKIYKAYKWLRCSYISYSNNKDGETSLMAEEADEGRAGTSHKD
NPTPSSSKEACLTATAQRDQDLPSEGCSSDACKEGTSAGNPNSGAGHEHSSHPWAEVPEGTSQDTNNSGP
LEHSFETKKLNGKALSKALSSRAEEPPASPGPKASGSTLNSASGNCPRTQSDDSEERSLDTVCANHNNGR
LHPRPLHPHNNGQSSGELETVACSSPGHLDTDHDSPSLTGTFLHKDCCGSEMACETPSAGMREDPPDPSG
LDSSKVVHGQSGLKRHRIELEDTESENSSSEKKLKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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