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Report for CCDS40957.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40957.1 Public Mus musculus X Ocrl 23 108 98 CCDS HistoryNCBI Gene:320634Re-query CCDS DB by CCDS ID:40957.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40957.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001202.14 ENSMUSP00000001202.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001202.14Link to Ensembl Protein Viewer:ENSMUSP00000001202.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000001202Re-query CCDS DB by Protein ID:ENSMUSP00000001202
Original member Current member NCBI NM_177215.3 NP_796189.2 Accepted alive Link to Nucleotide Sequence:NM_177215.3Link to Protein Sequence:NP_796189.2Re-query CCDS DB by Nucleotide ID:NM_177215Re-query CCDS DB by Protein ID:NP_796189Link to BLAST:NP_796189.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796189.2 900 Q6NVF0-1 900 100% 0 0

Chromosomal Locations for CCDS 40957.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 47912653 47912691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47912969 47913048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47916475 47916554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47920161 47920199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47930371 47930481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47930898 47930984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47931576 47931696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47931784 47931945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47933374 47933475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47934845 47934959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47936090 47936206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47936301 47936488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47938299 47938410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47941109 47941218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47943506 47943641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47947003 47947113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47947707 47947872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47948125 47948360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47956210 47956233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47960453 47960569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47961377 47961461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47962080 47962207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47963141 47963252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47963460 47963584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2703 nt):
ATGGAGCCGCGGCTCCCGATTGGAGCTCAGCCCCTGGCAATGGTGGCGGGTTTGGAGATGAAGGGTCCCC
TCCGGGAACCCTGCGTCCTGACCCTAGCCCGGAGGAATGGGCAGTATGAGTTAATAATCCAGTTGCATGG
AAAGGAACAACATGTTCAAGATATCATTCCTATAAATAGCCACTTCAGATGTGTTCAAGAAGCAGAAGAA
ACTCTTTTGATTGATATTGCTTCAAACAGTGGCTGCAAAATTCGGGTACAGGGAGACTGGACCAGAGAGC
GCCACTTTGAAATTCCTGATGAAGAACGCTGTTTGAAGTTCCTCTCAGAGGTCCTCGAAGCTCAGGAAGC
TCAGTCACAGCTTCTTGTTCCAGAACAAAAAGACTCATCTAGCTGGTACCAGAAATTAGACACTATGGAT
AAACCTGCTTATTCAGGGCTGCTTGGATTTGAGGATAATTTTTCATCTCTGGATTTAGATAAGAAAATGA
ATACACAAAATCCCCGATCAGGGAGTCATCGGGAACCACCCCCTCCACCTTCTTCATCGACTAGAATGCT
TTCGCGTGAAAAGGAAGCTTCAAACAAAGAACAGCCCAAAGTGACCAATACCATGCGGAAGCTATTTGTC
CCGAACACCCAAACCGGGCAGCGAGAGGGTCTCATTAAACATATCCTCACAAAGCGAGAGAAAGAATATG
TCAACATCCAGTCTTTCAGGTTTTTTGTTGGAACTTGGAATGTGAACGGCCAGTCTCCAGACAGCAGCTT
AGAACCTTGGCTCGACTGTGATCCAAATCCTCCTGATATTTACTGCATTGGATTCCAAGAGCTGGACTTG
AGCACCGAAGCCTTTTTCTACTTCGAGTCTGTGAAAGAGCAAGAGTGGTCCTTGGCTGTGGAAAGGGGGC
TGCCTTCGAAGGCCAAGTATAGAAAAGTTCAACTGGTCCGCCTTGTGGGGATGATGCTTCTTATATTTGC
CAGAAAAGATCAGTGTCAATACATCCGAGATGTTGCTACAGAAACAACTGGAACTGGAATCATGGGGAAA
ATGGGAAACAAAGGTGGGGTAGCTGTAAGATTTGTATTCCACAACACCACTTTCTGCATTGTCAATTCGC
ACCTGGCCGCCCACGTGGAAGAGTTCGAACGAAGGAATCAGGATTATAAAGACATCTGTGCAAGAATGAC
TTTTTCAGTCCCCAATCAGACTGTCCCGCAAGTGAACATCATGAAGCATGATGTTGTCATTTGGCTGGGA
GACTTGAACTACAGACTTTGCATGCCTGATGCCAGTGAGGTGAAAAGTCTTATTAATAAAAATGAGCTTC
ATAAGCTGTTGAAATTTGACCAGTTAAACATTCAGCGCACACAGAAAAAAGCTTTTGCGGATTTCAATGA
AGGGGAAATTAATTTCGTTCCCACGTACAAATATGATTCGAAAACTGACAGATGGGATTCCAGTGGGAAA
TGCCGAGTTCCCGCCTGGTGTGACCGAATTCTTTGGAGAGGAATAAATGTTAATCAACTTCATTACCGGA
GTCACATGGAACTCAAAACTAGTGACCACAAACCTGTTAGCGCCCTGTTCCATATTGGGGTGAAGGTTGT
GGATGAGCGGAGGTATCGGAAGGTCTTTGAAGATATCGTCCGCATTATGGACAGAATGGAAAACGACTTC
CTTCCTTCATTAGAACTTAGCAGGAGAGAGTTTTTTTTTGAGAATGTGAAGTTTCGGCAGCTGCAAAAGG
AGAAGTTCCAGATCAGCAACAATGGACAGGTTCCCTGCCATTTTTCTTTCATCCCTAAGCTTAATGACAG
CCAATACTGCAAGCCATGGCTTCGAGCTGAACCTTTTGAGGGCTACTTGGAGCCAAACGAGACCTTAGAC
ATCTCCCTTGATGTATACGTCAGCAAAGACTCTGTAACCATCCTGAACTCCGGTGAAGATAAGATTGAAG
ATATTCTTGTCCTCCATTTGGATCGAGGCAAAGATTACTTCTTGACCATCGGTGGGAATTACCTCCCAAG
TTGCTTTGGAACCTCATTGGAGGCTTTGTGCCGAATGAAAAGACCAATTCGAGAAGTTCCTGTCACCAAA
CTCATAGACCTGGAAGAAGACAGCTACCTAGAAAAGGAGAAATCCCTTCTGCAGATGGTACCCTTGGATG
AAGGTACCAGTGAGCGACCCCTTCAAGTCCCCAAAGAGATCTGGCTTCTAGTAGATCACTTGTTCAAATA
TGCATGTCACCAGGAGGACTTGTTCCAAACCCCTGGAATGCAGGAGGAGTTACAGCAGATCATTGATTGC
CTGGATACCAGCATTCCTGAGACAATTCCTGGCAATAACCATTCTGTGGCTGAAGCACTGCTCATTTTCC
TGGAAGCTCTGCCAGAGCCAGTCATCTGTTATGAGCTGTATCAGCGATGTCTTGACTCTGCTCATGATCC
TCGGATCTGCAAACAGGTCATTTCCCAGCTTCCAAGGTGCCATAGAAATGTTTTCCGCTACTTGATGGCA
TTCCTTCGTGAACTCTTAAAATTCTCTGACTACAACAATATCAACACCAACATGATTGCTACCCTGTTCA
GTAGCCTTCTCCTAAGACCTCCACCAAACCTCATGACAAGACAGACTCCAAATGACCGCCAGCATGCCAT
CCAGTTCCTCTTGGTCTTCCTGCTTGGGAACGAGGAAGACTAA

Translation (900 aa):
MEPRLPIGAQPLAMVAGLEMKGPLREPCVLTLARRNGQYELIIQLHGKEQHVQDIIPINSHFRCVQEAEE
TLLIDIASNSGCKIRVQGDWTRERHFEIPDEERCLKFLSEVLEAQEAQSQLLVPEQKDSSSWYQKLDTMD
KPAYSGLLGFEDNFSSLDLDKKMNTQNPRSGSHREPPPPPSSSTRMLSREKEASNKEQPKVTNTMRKLFV
PNTQTGQREGLIKHILTKREKEYVNIQSFRFFVGTWNVNGQSPDSSLEPWLDCDPNPPDIYCIGFQELDL
STEAFFYFESVKEQEWSLAVERGLPSKAKYRKVQLVRLVGMMLLIFARKDQCQYIRDVATETTGTGIMGK
MGNKGGVAVRFVFHNTTFCIVNSHLAAHVEEFERRNQDYKDICARMTFSVPNQTVPQVNIMKHDVVIWLG
DLNYRLCMPDASEVKSLINKNELHKLLKFDQLNIQRTQKKAFADFNEGEINFVPTYKYDSKTDRWDSSGK
CRVPAWCDRILWRGINVNQLHYRSHMELKTSDHKPVSALFHIGVKVVDERRYRKVFEDIVRIMDRMENDF
LPSLELSRREFFFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETLD
ISLDVYVSKDSVTILNSGEDKIEDILVLHLDRGKDYFLTIGGNYLPSCFGTSLEALCRMKRPIREVPVTK
LIDLEEDSYLEKEKSLLQMVPLDEGTSERPLQVPKEIWLLVDHLFKYACHQEDLFQTPGMQEELQQIIDC
LDTSIPETIPGNNHSVAEALLIFLEALPEPVICYELYQRCLDSAHDPRICKQVISQLPRCHRNVFRYLMA
FLRELLKFSDYNNINTNMIATLFSSLLLRPPPNLMTRQTPNDRQHAIQFLLVFLLGNEED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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