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Report for CCDS39576.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39576.1 Public Mus musculus 6 Lmod3 23 108 98 CCDS HistoryNCBI Gene:320502Re-query CCDS DB by CCDS ID:39576.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39576.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095655.3 ENSMUSP00000093315.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095655.3Link to Ensembl Protein Viewer:ENSMUSP00000093315.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000095655Re-query CCDS DB by Protein ID:ENSMUSP00000093315
Original member Current member NCBI NM_001081157.2 NP_001074626.1 Accepted alive Link to Nucleotide Sequence:NM_001081157.2Link to Protein Sequence:NP_001074626.1Re-query CCDS DB by Nucleotide ID:NM_001081157Re-query CCDS DB by Protein ID:NP_001074626Link to BLAST:NP_001074626.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074626.1 571 E9QA62 571 100% 0 0

Chromosomal Locations for CCDS 39576.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 97238845 97238871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97247170 97248564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97252278 97252571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1716 nt):
ATGTCGGGGCACAGCAGGAATTCGGAGCAAGAAGACACCCTTAGTGAGGAGCTCGATGAAGACGAACTCC
TAGCCAACTTATCCCCTGAAGAGCTGAAGGAACTGCAGTCAGAGATGGAAGTCATGGCCCCTGACCCCCA
CCTTCCTGTGGGGATGATCCAAAAGGATCAAACAGACAAGGCACCCACAGGAAACTTCAACCATAAGTCT
CTCGTTGATTACATGTATTTGCAAAAGGCGTCTAGACGCATGCTGGAAGATGAACGAGTTCCTGTCAGTT
TTGTGCAGTCTGAGAAAAACACTCAAAACCAGCGTGAAGTAGGAGACAAGGGCATTAAAAACATGCCCCA
GTTTTTAAAAGAAAAGCTCAATAGTGAAATCCTTGCAAAAAAAAGAGAATCAAATGGGAGCAACAATGTA
CAAGAAGCAGAAGATGATGATGAAGATGAAGAGGAGGAGGAGGAAGATGACGAAGATGAAGAGGAGGAGG
AAGAAGATGAAGAGGATGATGAAGGGGAAGAGGATGAAGATGGTGAACAAGCCAACAGAGAAAAAAATGA
CGCAAAAGAACAAATCCACAACAATCCGGGCACCTACCAGCAACTGGCTACTAAAACAGCGCACGAGCAA
AAAGACACATCAGAGACCAAAGAAAAAGGTGAGAAGAAAATAGCCAAATTAGACCCTAAGAAGTTAGCTC
TAGATACCAGTTTTCTGAAGGTAAGTGCGAGGCCCTCAGGGAACCAGACAGACCTGGACGGGAGCTTGAG
ACGAGTGAGACAGAACGACCCCGACATGAAGGAACTCAACCTGAACAACATTGAAAATATCCCTAAAGAA
ATGTTGCTGGACTTCGTCAATGCCATGAAGAAAAACAAACACATCAAAACCTTCAGTTTAGCCAACGTCG
GTGCTGATGAGAGCGTAGCGTTTGCCCTGGCCAACATGCTGCGGGAAAACAGGAGCGTCACCACCCTCAA
TATTGAGTCCAACTTCATCACTGGGAAGGGCATCGTGGCCATCATGAGGTGCCTCCAGTTCAATGAAACG
CTAACTGAACTTCGGTTTCACAACCAGAGACATATGCTAGGTCACCACGCCGAGATGGAAATATCCAGGC
TTCTGAAGGCCAACACCACTCTGTTGAAGATGGGCTACCATTTCGAGCTTCCGGGTCCCAGAATGGTGGT
AACGAATCTGCTTACCAGGAACCAGGATAAACGGAGGCAGAAACGACAGGAGGAACAGCAGCAGCAGCAA
CTTAAAGAGCAGAGAAAGCTGATAGCTATGTTGGAGAATGGGTTGGGGCTGCCCCCTGGGATGTGGGAGA
GGTTGGGAGGACCCATGCCCGACCCCAGAATGCAGGAGTTCTTCCAGCCTGCATCTGGGCGGCCCCTCGA
TGCTCAGGAAGTCCCCTTTGGTTCAAGAAAGGAAATGATCAAAAATCCGCCCCAGCCTCCACAGTGCAAG
ACGGACCCTGACTCCTTCAGGGTGGTGAAGCTGAAGAGAATTCAGCGCAAATCTCGAATGCCGGAAGCCA
GAGAGGCACAGGAGAAAACCAACCTCAAAGATGTAATCAAAACGCTCAAGCCAGTGCCGAGAAATAGGCC
GCCCCCGCTGGTGGAAATCACTCCCAGAGACCAGCTCTTGAATGACATCCGACACAGCAATGTCGCCTAC
CTTAAACCTGTGCAACTGCCAAAGGAGCTGGAGTAA

Translation (571 aa):
MSGHSRNSEQEDTLSEELDEDELLANLSPEELKELQSEMEVMAPDPHLPVGMIQKDQTDKAPTGNFNHKS
LVDYMYLQKASRRMLEDERVPVSFVQSEKNTQNQREVGDKGIKNMPQFLKEKLNSEILAKKRESNGSNNV
QEAEDDDEDEEEEEEDDEDEEEEEEDEEDDEGEEDEDGEQANREKNDAKEQIHNNPGTYQQLATKTAHEQ
KDTSETKEKGEKKIAKLDPKKLALDTSFLKVSARPSGNQTDLDGSLRRVRQNDPDMKELNLNNIENIPKE
MLLDFVNAMKKNKHIKTFSLANVGADESVAFALANMLRENRSVTTLNIESNFITGKGIVAIMRCLQFNET
LTELRFHNQRHMLGHHAEMEISRLLKANTTLLKMGYHFELPGPRMVVTNLLTRNQDKRRQKRQEEQQQQQ
LKEQRKLIAMLENGLGLPPGMWERLGGPMPDPRMQEFFQPASGRPLDAQEVPFGSRKEMIKNPPQPPQCK
TDPDSFRVVKLKRIQRKSRMPEAREAQEKTNLKDVIKTLKPVPRNRPPPLVEITPRDQLLNDIRHSNVAY
LKPVQLPKELE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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