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Report for CCDS15575.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15575.1 Public Mus musculus 1 Lefty2 23 108 98 CCDS HistoryNCBI Gene:320202Re-query CCDS DB by CCDS ID:15575.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15575.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085797.5 ENSMUSP00000082952.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085797.5Link to Ensembl Protein Viewer:ENSMUSP00000082952.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000085797Re-query CCDS DB by Protein ID:ENSMUSP00000082952
Original member Current member NCBI NM_177099.4 NP_796073.1 Accepted alive Link to Nucleotide Sequence:NM_177099.4Link to Protein Sequence:NP_796073.1Re-query CCDS DB by Nucleotide ID:NM_177099Re-query CCDS DB by Protein ID:NP_796073Link to BLAST:NP_796073.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796073.1 368 P57785 368 100% 0 0

Chromosomal Locations for CCDS 15575.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 180893184 180893433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180894135 180894381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180894596 180894841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180897450 180897813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1107 nt):
ATGAAGTCCCTGTGGCTTTGCTGGGCACTCTGGGTACTGCCCCTGGCTGGCCCTGGGGCAGCGATGACCG
AGGAACAGGTCCTGAGCAGTCTACTGCAGCAGCTGCAGCTCAGCCAGGCCCCCACCCTGGACAGCGCGGA
TGTGGAGGAGATGGCCATCCCTACCCACGTGAGGTCCCAGTATGTGGCCCTGCTGCAGGGAAGTCACGCT
GACCGCTCCCGAGGCAAGAGGTTCAGCCAGAATTTTCGAGAGGTGGCAGGCAGGTTCCTGATGTCAGAGA
CCTCCACTCACCTGCTAGTGTTCGGAATGGAGCAGCGGCTGCCGCCTAACAGCGAGCTGGTGCAGGCTGT
GCTGCGGCTGTTCCAGGAGCCTGTGCCCAGAACAGCTCTCCGGAGGTTTGAGAGGCTGTCCCCACACAGT
GCCCGGGCTCGGGTCACCATTGAATGGCTGAGAGTCCGTGAGGATGGCTCCAATCGCACTGCCCTCATCG
ACTCTAGGCTCGTGTCCATCCACGAGAGCGGCTGGAAGGCCTTCGACGTGACCGAGGCCGTGAACTTCTG
GCAGCAGCTGAGCCGGCCGAGGCAGCCGCTGCTGCTCCAGGTGTCGGTGCAGAGGGAGCATCTGGGGCCG
GGGACCTGGAGCGCACACAAGTTGGTCCGTTTCGCGGCGCAGGGGACGCCGGACGGCAAGGGGCAGGGCG
AGCCACAGCTGGAGCTGCACACGCTGGACCTCAAGGACTACGGAGCTCAAGGCAATTGTGACCCCGAGGT
ACCAGTGACTGAAGGCACCCGATGCTGTCGCCAGGAGATGTACCTGGACCTGCAGGGGATGAAGTGGGCC
GAGAACTGGATCCTAGAACCGCCAGGGTTCCTGACGTATGAATGTGTGGGCAGCTGCCTGCAGCTACCAG
AGTCCCTGACCATCGGGTGGCCATTTCTGGGGCCTCGGCAGTGTGTTGCCTCAGAGATGACCTCCTTGCC
CATGATTGTCAGTGTGAAGGAGGGAGGCAGGACCAGGCCTCAAGTGGTCAGCCTGCCCAACATGAGGGTG
CAGACCTGTAGCTGCGCCTCAGATGGGGCGCTCATACCCAGGGGGATAGATCTGTAG

Translation (368 aa):
MKSLWLCWALWVLPLAGPGAAMTEEQVLSSLLQQLQLSQAPTLDSADVEEMAIPTHVRSQYVALLQGSHA
DRSRGKRFSQNFREVAGRFLMSETSTHLLVFGMEQRLPPNSELVQAVLRLFQEPVPRTALRRFERLSPHS
ARARVTIEWLRVREDGSNRTALIDSRLVSIHESGWKAFDVTEAVNFWQQLSRPRQPLLLQVSVQREHLGP
GTWSAHKLVRFAAQGTPDGKGQGEPQLELHTLDLKDYGAQGNCDPEVPVTEGTRCCRQEMYLDLQGMKWA
ENWILEPPGFLTYECVGSCLQLPESLTIGWPFLGPRQCVASEMTSLPMIVSVKEGGRTRPQVVSLPNMRV
QTCSCASDGALIPRGIDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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