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Report for CCDS22930.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22930.1 Public Mus musculus 9 Npsr1 23 108 98 CCDS HistoryNCBI Gene:319239Re-query CCDS DB by CCDS ID:22930.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22930.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059650.10 ENSMUSP00000056432.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059650.10Link to Ensembl Protein Viewer:ENSMUSP00000056432.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000059650Re-query CCDS DB by Protein ID:ENSMUSP00000056432
Original member Current member NCBI NM_175678.3 NP_783609.1 Accepted alive Link to Nucleotide Sequence:NM_175678.3Link to Protein Sequence:NP_783609.1Re-query CCDS DB by Nucleotide ID:NM_175678Re-query CCDS DB by Protein ID:NP_783609Link to BLAST:NP_783609.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_783609.1 371 Q8BZP8 371 100% 0 0

Chromosomal Locations for CCDS 22930.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 24098200 24098346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24134734 24134866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24254600 24254703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24286757 24286850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24289800 24290001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24300399 24300475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24310009 24310095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24313173 24313353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24313723 24313813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1116 nt):
ATGCCAGCCAACCTCACAGAGGGCAGCTTTCATGCCAACCAGACTGTGCCGATGCTAGATTCTTCCCCAG
TAGCTTGCACTGAAATTGTGACGTTCACTGAAGCACTGGTGGCTGAGGAGTGGGGCTCCTTCTACTCCTC
CTTTAAGACAGAACAGCTGATAACCCTGTGGGTCCTGTTTGTCGTCACTATTGTGGGAAACTCTGTTGTG
CTGTTCTCCACGTGCAGAAGAAAAAGAAAGTCCAGAATGACCTTCTTTGTGACACAATTGGCCATCACAG
ACTCCTTCACGGGCCTGATCAACATCTTGACAGACATTATTTGGCGATTCACAGGAGACTTCATGGCCCC
TGACCTGGTTTGCAGAGTCGTCCGCTACTTGCAGGTTGTCCTGCTGTATGCCTCTACCTACGTCCTGGTG
TCCCTCAGCATAGACAGATACCATGCCATCGTTTACCCCATGAAGTTTCTTCAAGGAGAGAAGCAAGCCA
AAGTCCTCATCGGAATAGCGTGGAGCCTCTCGTTCCTGTTCTCCATTCCCACGCTGATCATATTTGGGAA
AAGGACACTTTCCAATGGTGAGGTGCAGTGCTGGGCACTGTGGCCGGATGACTCCTACTGGACCCCGTAC
ATGACCATCGTCGCCTTTCTGGTGTACTTCATTCCCTTGGCAATTATCAGCGTTATCTATGGCCTTGTGA
TCCGAACTATTTGGATGAAAAGCAAAACCCATGAGACGGTGATTTCCAACTGCTCAGATGGCAAACTATG
CTGCAGCTACAACCGAGGGCTCATCTCTAAGGCAAAAATCAAGGCCATCAAGTATAGCATCGTCATAATC
CTTGCTTTCATCTGCTGCTGGAGCCCATACTTCCTCTTTGACATATTAGACAACTTCAACGTCCTTCCAG
ACACCAAGGAGCGTTTCTATGCCTCTGTGATTATCCAGAACCTGCCCGCCTTGAACAGTGCCATTAACCC
CCTCATCTACTGCATCTTCAGCAGCTCCATCTGCTCCCCCTGCAAGATGCAAAGATCACAGGATTCCAGA
ATGACATACCGAGAGAGAAGCGAGAGACACGAGATGCAGATTCTCTCCAAGCCGGAATTCATCTAA

Translation (371 aa):
MPANLTEGSFHANQTVPMLDSSPVACTEIVTFTEALVAEEWGSFYSSFKTEQLITLWVLFVVTIVGNSVV
LFSTCRRKRKSRMTFFVTQLAITDSFTGLINILTDIIWRFTGDFMAPDLVCRVVRYLQVVLLYASTYVLV
SLSIDRYHAIVYPMKFLQGEKQAKVLIGIAWSLSFLFSIPTLIIFGKRTLSNGEVQCWALWPDDSYWTPY
MTIVAFLVYFIPLAIISVIYGLVIRTIWMKSKTHETVISNCSDGKLCCSYNRGLISKAKIKAIKYSIVII
LAFICCWSPYFLFDILDNFNVLPDTKERFYASVIIQNLPALNSAINPLIYCIFSSSICSPCKMQRSQDSR
MTYRERSERHEMQILSKPEFI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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