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Report for CCDS18333.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18333.1 Public Mus musculus 4 Ifnz 23 108 98 CCDS HistoryNCBI Gene:319146Re-query CCDS DB by CCDS ID:18333.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18333.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105144.1 ENSMUSP00000100775.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105144.1Link to Ensembl Protein Viewer:ENSMUSP00000100775.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105144Re-query CCDS DB by Protein ID:ENSMUSP00000100775
Original member Current member NCBI NM_197889.2 NP_922871.1 Accepted alive Link to Nucleotide Sequence:NM_197889.2Link to Protein Sequence:NP_922871.1Re-query CCDS DB by Nucleotide ID:NM_197889Re-query CCDS DB by Protein ID:NP_922871Link to BLAST:NP_922871.1

Chromosomal Locations for CCDS 18333.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 88782786 88783334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (549 nt):
ATGCTGCCTGTGCATCTATTCCTGGTGGGAGGGGTGATGCTGAGCTGCAGCCCAGCCAGCTCACTTGATT
CTGGTAAATCTGGGAGCCTGCACCTGGAGCGCAGCGAAACCGCGCGCTTCCTAGCAGAGCTCCGAAGCGT
GCCGGGTCACCAGTGCCTGCGGGACAGGACCGATTTCCCATGTCCCTGGAAGGAAGGAACTAACATCACA
CCGATGACTCTGGGAGAAACCACCAGTTGCTACTCCCAGACCCTCAAGCAGGTCCTCCACCTCTTTGACA
CAGAGGCCAGCAGAGCTGCCTGGCACGAGAGGGCGCTGGACCAGCTACTATCTAGCCTGTGGCGTGAGCT
GCAAGTGCTGAAGAGGCCAAGAGAGCAGGGCCAGTCCTGTCCACTGCCTTTTGCCCTGGCCATCCGCACC
TACTTCCGAGGTTTCTTCCGCTATCTGAAGGCAAAGGCATACAGCGCTTGCTCCTGGGAGATCGTCAGAG
TCCAATTGCAAGTGGACCTTCCAGCGTTCCCACTGTCTGCGAGAAGAGGCCCAAGATGA

Translation (182 aa):
MLPVHLFLVGGVMLSCSPASSLDSGKSGSLHLERSETARFLAELRSVPGHQCLRDRTDFPCPWKEGTNIT
PMTLGETTSCYSQTLKQVLHLFDTEASRAAWHERALDQLLSSLWRELQVLKRPREQGQSCPLPFALAIRT
YFRGFFRYLKAKAYSACSWEIVRVQLQVDLPAFPLSARRGPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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