NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS13562.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13562.1 Public Homo sapiens 21 POTED 24 110 108 CCDS HistoryNCBI Gene:317754Re-query CCDS DB by CCDS ID:13562.1See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13562.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000299443.6 ENSP00000299443.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000299443.6Link to Ensembl Protein Viewer:ENSP00000299443.5Re-query CCDS DB by Nucleotide ID:ENST00000299443Re-query CCDS DB by Protein ID:ENSP00000299443
Original member Current member NCBI NM_174981.6 NP_778146.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_174981.6Link to Protein Sequence:NP_778146.2Re-query CCDS DB by Nucleotide ID:NM_174981Re-query CCDS DB by Protein ID:NP_778146Link to BLAST:NP_778146.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_778146.2 584 Q86YR6 584 100% 0 0

Chromosomal Locations for CCDS 13562.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 13610229 13610749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 13615123 13615237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 13615397 13615570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 13618349 13618455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 13620158 13620295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 13622805 13622875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 13628382 13628452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 13629856 13629900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 13630941 13631107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 13639515 13639638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 13641345 13641566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1755 nt):
ATGGTGGCTGAGGTTTGTTCAATGCCCACTGCCTCTACTGTGAAGAAGCCATTTGATCTCAGGAGCAAGA
TGGGCAAGTGGTGCCACCACCGCTTCCCCTGCTGCAGGGGGAGCGGCAAGAGCAACATGGGCACTTCTGG
AGACCACGACGACTCCTTTATGAAGATGCTCAGGAGCAAGATGGGCAAGTGTTGCCGCCACTGCTTCCCC
TGCTGCAGGGGGAGCGGCACGAGCAACGTGGGCACTTCTGGAGACCATGAAAACTCCTTTATGAAGATGC
TCAGGAGCAAGATGGGCAAGTGGTGCTGTCACTGCTTCCCCTGCTGCAGGGGGAGCGGCAAGAGCAACGT
GGGCGCTTGGGGAGACTACGACCACAGCGCCTTCATGGAGCCGAGGTACCACATCCGTCGAGAAGATCTG
GACAAGCTCCACAGAGCTGCCTGGTGGGGTAAAGTCCCCAGAAAGGATCTCATCGTCATGCTCAGGGACA
CTGACATGAACAAGAGGGACAAGGAAAAGAGGACTGCTCTACATTTGGCCTCTGCCAATGGAAATTCAGA
AGTAGTACAACTCCTGCTGGACAGACGATGTCAACTTAATGTCCTTGACAACAAAAAAAGGACAGCTCTG
ATAAAGGCCATACAATGCCAGGAAGATGAATGTGTGTTAATGTTGCTGGAACATGGCGCTGATCGAAATA
TTCCAGATGAGTATGGAAATACCGCTCTACACTATGCTATCTACAATGAAGATAAATTAATGGCCAAAGC
ACTGCTCTTATATGGTGCTGATATTGAATCAAAAAACAAGTGTGGCCTCACACCACTTTTGCTTGGCGTA
CATGAACAAAAACAGCAAGTGGTGAAATTTTTAATCAAGAAAAAAGCTAATTTAAATGTACTTGATAGAT
ATGGAAGAACTGCCCTCATACTTGCTGTATGTTGTGGATCAGCAAGTATAGTCAATCTTCTACTTGAGCA
AAATGTTGATGTATCTTCTCAAGATCTATCTGGACAGACGGCCAGAGAGTATGCTGTTTCTAGTCATCAT
CATGTAATTTGTGAATTACTTTCTGACTATAAAGAAAAACAGATGCTAAAAATCTCTTCTGAAAACAGCA
ATCCAGAACAAGACTTAAAGCTGACATCAGAGGAAGAGTCACAAAGGCTTAAAGTCAGTGAAAATAGCCA
GCCAGAGAAAATGTCTCAAGAACCAGAAATAAATAAGGACTGTGATAGAGAGGTTGAAGAAGAAATAAAG
AAGCATGGAAGTAATCCTGTGGGATTACCAGAAAACCTGACTAATGGTGCCAGTGCTGGCAATGGTGATG
ATGGATTAATTCCACAAAGGAGGAGCAGAAAACCTGAAAATCAGCAATTTCCTGACACTGAGAATGAAGA
GTATCACAGTGATGAACAAAATGATACCCGGAAACAACTTTCTGAAGAACAGAACACTGGAATATCACAA
GATGAGATTCTGACTAATAAACAAAAGCAGATAGAAGTGGCTGAACAGAAAATGAATTCTGAGCTTTCTC
TTAGTCATAAGAAAGAAGAAGATCTCTTGCGTGAAAACAGCGTGTTGCAGGAAGAAATTGCCATGCTAAG
ACTGGAACTAGATGAAACAAAACATCAGAACCAGCTAAGGGAAAATAAAATTTTGGAGGAAATTGAAAGT
GTGAAAGAAAAGACTGATAAACTTCTAAGGGCTATGCAATTGAATGAAGAAGCATTAACGAAAACCAATA
TTTAA

Translation (584 aa):
MVAEVCSMPTASTVKKPFDLRSKMGKWCHHRFPCCRGSGKSNMGTSGDHDDSFMKMLRSKMGKCCRHCFP
CCRGSGTSNVGTSGDHENSFMKMLRSKMGKWCCHCFPCCRGSGKSNVGAWGDYDHSAFMEPRYHIRREDL
DKLHRAAWWGKVPRKDLIVMLRDTDMNKRDKEKRTALHLASANGNSEVVQLLLDRRCQLNVLDNKKRTAL
IKAIQCQEDECVLMLLEHGADRNIPDEYGNTALHYAIYNEDKLMAKALLLYGADIESKNKCGLTPLLLGV
HEQKQQVVKFLIKKKANLNVLDRYGRTALILAVCCGSASIVNLLLEQNVDVSSQDLSGQTAREYAVSSHH
HVICELLSDYKEKQMLKISSENSNPEQDLKLTSEEESQRLKVSENSQPEKMSQEPEINKDCDREVEEEIK
KHGSNPVGLPENLTNGASAGNGDDGLIPQRRSRKPENQQFPDTENEEYHSDEQNDTRKQLSEEQNTGISQ
DEILTNKQKQIEVAEQKMNSELSLSHKKEEDLLRENSVLQEEIAMLRLELDETKHQNQLRENKILEEIES
VKEKTDKLLRAMQLNEEALTKTNI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH