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Report for CCDS41365.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41365.1 Public Homo sapiens 1 SYPL2 24 110 108 CCDS HistoryNCBI Gene:284612Re-query CCDS DB by CCDS ID:41365.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41365.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369872.4 ENSP00000358888.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369872.4Link to Ensembl Protein Viewer:ENSP00000358888.3Re-query CCDS DB by Nucleotide ID:ENST00000369872Re-query CCDS DB by Protein ID:ENSP00000358888
Original member Current member NCBI NM_001040709.2 NP_001035799.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001040709.2Link to Protein Sequence:NP_001035799.1Re-query CCDS DB by Nucleotide ID:NM_001040709Re-query CCDS DB by Protein ID:NP_001035799Link to BLAST:NP_001035799.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035799.1 272 Q5VXT5-1 272 100% 0 0

Chromosomal Locations for CCDS 41365.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 109466844 109466897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109467059 109467133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109475581 109475705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109476776 109476977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109477818 109478009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109479378 109479548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (819 nt):
ATGTCCTCGACCGAGAGCGCCGGCCGCACGGCGGACAAGTCGCCGCGCCAGCAGGTGGACCGCCTACTCG
TGGGGCTGCGCTGGCGGCGGCTGGAGGAGCCGCTGGGCTTCATCAAAGTTCTCCAGTGGCTCTTTGCTAT
TTTCGCCTTCGGGTCCTGTGGCTCCTACAGCGGGGAGACAGGAGCAATGGTTCGCTGCAACAACGAAGCC
AAGGACGTGAGCTCCATCATCGTTGCATTTGGCTATCCCTTCAGGTTGCACCGGATCCAATATGAGATGC
CCCTCTGCGATGAAGAGTCCAGCTCCAAGACCATGCACCTCATGGGGGACTTCTCTGCACCCGCCGAGTT
CTTCGTGACCCTTGGCATCTTTTCCTTCTTCTATACCATGGCTGCCCTAGTTATCTACCTGCGCTTCCAC
AACCTCTACACAGAGAACAAACGCTTCCCGCTGGTGGACTTCTGTGTGACTGTCTCCTTCACCTTCTTCT
GGCTGGTAGCTGCAGCTGCCTGGGGCAAGGGCCTGACCGATGTCAAGGGGGCCACACGACCATCCAGCTT
GACAGCAGCCATGTCAGTGTGCCATGGAGAGGAAGCAGTGTGCAGTGCCGGGGCCACGCCCTCTATGGGC
CTGGCCAACATCTCCGTGCTCTTTGGCTTTATCAACTTCTTCCTGTGGGCCGGGAACTGTTGGTTTGTGT
TCAAGGAGACCCCGTGGCATGGACAGGGCCAGGGCCAGGACCAGGACCAGGACCAGGACCAGGGCCAGGG
TCCCAGCCAGGAGAGTGCAGCTGAGCAGGGAGCAGTGGAGAAGCAGTAA

Translation (272 aa):
MSSTESAGRTADKSPRQQVDRLLVGLRWRRLEEPLGFIKVLQWLFAIFAFGSCGSYSGETGAMVRCNNEA
KDVSSIIVAFGYPFRLHRIQYEMPLCDEESSSKTMHLMGDFSAPAEFFVTLGIFSFFYTMAALVIYLRFH
NLYTENKRFPLVDFCVTVSFTFFWLVAAAAWGKGLTDVKGATRPSSLTAAMSVCHGEEAVCSAGATPSMG
LANISVLFGFINFFLWAGNCWFVFKETPWHGQGQGQDQDQDQDQGQGPSQESAAEQGAVEKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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