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Report for CCDS19488.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19488.1 Public Mus musculus 5 Abcg3 23 108 98 CCDS HistoryNCBI Gene:27405Re-query CCDS DB by CCDS ID:19488.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19488.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031239.12 ENSMUSP00000031239.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031239.12Link to Ensembl Protein Viewer:ENSMUSP00000031239.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000031239Re-query CCDS DB by Protein ID:ENSMUSP00000031239
Original member NCBI NM_030239.2 NP_084515.2 Updated not alive Link to Nucleotide Sequence:NM_030239.2Link to Protein Sequence:NP_084515.2Re-query CCDS DB by Nucleotide ID:NM_030239Re-query CCDS DB by Protein ID:NP_084515
Current member NCBI NM_030239.3 NP_084515.2 Accepted alive Link to Nucleotide Sequence:NM_030239.3Link to Protein Sequence:NP_084515.2Re-query CCDS DB by Nucleotide ID:NM_030239Re-query CCDS DB by Protein ID:NP_084515Link to BLAST:NP_084515.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084515.2 650 Q99P81 650 100% 0 0

Chromosomal Locations for CCDS 19488.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 104935950 104936103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104938183 104938268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104939142 104939231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104948322 104948476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104951517 104951641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104953084 104953173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104961177 104961259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104963430 104963677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104966728 104966829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104968147 104968298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104969395 104969531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104973979 104974131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104974648 104974762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104975363 104975422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104977613 104977815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1953 nt):
ATGGCTTCTAATAATGACCCCACTGTAATCTCAATGATAGAAAGACATCTTTGTGACCTTCCTGAAACAA
ACACCAGTGACCTGAAGACATTGACTGAAGAGGCTGTGTTGAGTTTTCACAACATCAGTTACCAAGAAAC
AGTACAGAGTGGCTTTCCACTTCGTAAAAAGGCATATGTGATAGAAAGACTATCAAACATCAGTGGGATC
ATGAAACCTGGCCTCAATGCCATTATGGGACCTCAGGATGGGAGCAGATCTTTGTTGTTAGATGTCTTAG
CTGCAAGGAGAGATCCGCGTGGATTATCAGGAGATATTTTGATAAATGGCAAACCTCGACCTGCTAATTT
CAAGTGTACTTCTGGTTATGTACCACAAAATGATGTGGTGTTGGGCACAGTGACCGTGAGAGACAATTTA
GAGTTCTCAGCAGCTCTTCGTCTCCCAGTGACTATAACAAGAGATGAAAAGAGAAGGAGGATTAATGAGG
TGCTTGAACTTCTGCATCTGAATAAAGAACAAAATATCAAGCCTAGATCCAAAGAACTCAGGAAAAGGAC
CAGTATAGCAATGGAGCTGGTCACTGAGCATCCCATTTTGTTCTTGGATGATCCCACAACTGGCTTAGAT
TTGAGAACTACGACTGATGTCATTTTAGTCCTGAGAAGGATGTCGAAGAAGGGACGGACCATCATCTTCT
CCATCAATCAGCCTCAGTACTCCATCTTCAAATTTTTTGATAGCCTCACCTTAGTGGCTTCAGGAAAAGT
TATGTTTCATGGACCTGCACAGGATGCTTTGGAGTACTTCAGATCTGCAGGTTACAATTATGAATCGCAC
AACAACCCTGCAGACTTCTTCCTGGATGTCATTAATGGAGGTTTCTCTAATATATTAGACACAGAGGAAG
ACGGCCATGAAGATGACAAATATGAAGAGCTTTTTGAGAGACAGTATCAAGTCACAGGAAAACTGGCCAA
TATGTATGCCCAGTCCCCATTATACAGTGAAACAAGAGCCATCCTGGATCAACTCTTGGGAGAACAGAAG
CTGGAGAGGAGCTCAGCCGTGGAGACAACATGTGTCACCCCTTTCTGCCATCAGCTCAAGTGGATTATCT
GTCAATCATTCAAAAATTTCAAGGGTTTTCCATGGGTCACTGTGATTCAGGCCATTATCACAGTCATATT
GGCTACAGCCGTAGGCACTGCTTTCCGTGTCCTAAAAAATGATTGTATTGAAGTCCAGATGAGAGCTGGC
CTACTTTACCTGCTCACCATCTTCCAGTGTATCACAAGTGTGTCTGCAGGGGAGCTCTTTGTGATTGACA
GGGTTCGCTTTCTACATGAGCACACCAGTGGATACTACAGAGTGTCATCCTATTTCTTTGGGAAATTGCT
GGCTGAGCTAATACCCAGGAGGCTTTTGCCAAGTACTGTATTTTCTCTAATAACATATGTCATAGCAGGA
GTAAAAATGAGTATGAAGTGTTTCTTCACTATGATATGTACCATCATGGTGCTGGCCTATTCTGCCAGTT
CCCTGCCATTGTCCATAGGAGCTGGGGAGAATGCAGTGGCTGTTCCAACACTGCTTGTGACCATCTACTT
TGTGTTCATGCTGTTTTTTTCAGGTCTATCACTATATTCTGGAAGCTTCCTGCCTAAGCTCTCATGGATT
CAGTACTTTAGCATTCCTCATTATGGATTTAGGGCTCTGCTGCATAATGAATTCCTGGGACAAAACTTTT
GTCCAGAACACAACACAGAAGAAGTCAGTAGATGCCATAACTATGTTATATGTACTGGTGAAGAATTCTT
GATGATCCAGGGCATTGATCTCTCATCGTGGGGCTTCTGGGAGAATCACCTGGCTTTAGTTTGTACAATG
ATTATCCTCTTAACAATTACCTATGTGCAGTTATTACAGGTTAAGAATATTAGAAATTTTTAG

Translation (650 aa):
MASNNDPTVISMIERHLCDLPETNTSDLKTLTEEAVLSFHNISYQETVQSGFPLRKKAYVIERLSNISGI
MKPGLNAIMGPQDGSRSLLLDVLAARRDPRGLSGDILINGKPRPANFKCTSGYVPQNDVVLGTVTVRDNL
EFSAALRLPVTITRDEKRRRINEVLELLHLNKEQNIKPRSKELRKRTSIAMELVTEHPILFLDDPTTGLD
LRTTTDVILVLRRMSKKGRTIIFSINQPQYSIFKFFDSLTLVASGKVMFHGPAQDALEYFRSAGYNYESH
NNPADFFLDVINGGFSNILDTEEDGHEDDKYEELFERQYQVTGKLANMYAQSPLYSETRAILDQLLGEQK
LERSSAVETTCVTPFCHQLKWIICQSFKNFKGFPWVTVIQAIITVILATAVGTAFRVLKNDCIEVQMRAG
LLYLLTIFQCITSVSAGELFVIDRVRFLHEHTSGYYRVSSYFFGKLLAELIPRRLLPSTVFSLITYVIAG
VKMSMKCFFTMICTIMVLAYSASSLPLSIGAGENAVAVPTLLVTIYFVFMLFFSGLSLYSGSFLPKLSWI
QYFSIPHYGFRALLHNEFLGQNFCPEHNTEEVSRCHNYVICTGEEFLMIQGIDLSSWGFWENHLALVCTM
IILLTITYVQLLQVKNIRNF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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