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Report for CCDS1310.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1310.1 Public Homo sapiens 1 KLHL20 24 110 108 CCDS HistoryNCBI Gene:27252Re-query CCDS DB by CCDS ID:1310.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1310.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000209884.5 ENSP00000209884.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000209884.5Link to Ensembl Protein Viewer:ENSP00000209884.4Re-query CCDS DB by Nucleotide ID:ENST00000209884Re-query CCDS DB by Protein ID:ENSP00000209884
Original member Current member NCBI NM_014458.4 NP_055273.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014458.4Link to Protein Sequence:NP_055273.2Re-query CCDS DB by Nucleotide ID:NM_014458Re-query CCDS DB by Protein ID:NP_055273Link to BLAST:NP_055273.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055273.2 609 Q9Y2M5-1 609 100% 0 0

Chromosomal Locations for CCDS 1310.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 173716044 173716066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173733713 173734286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173751764 173751922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173753213 173753307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173755923 173756038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173756976 173757159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173766146 173766289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173774305 173774438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173775634 173775842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173782124 173782230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173785163 173785247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1830 nt):
ATGGAAGGAAAGCCAATGCGCAGGTGTACCAACATTCGACCAGGAGAGACTGGAATGGATGTAACAAGCC
GCTGCACCCTTGGAGACCCCAACAAACTGCCAGAAGGGGTTCCCCAACCTGCCCGCATGCCCTATATCTC
AGACAAGCACCCTCGACAAACCTTGGAAGTGATTAACCTTCTGAGAAAGCACCGGGAGCTATGTGATGTG
GTGCTAGTTGTGGGCGCCAAGAAGATATATGCCCATCGAGTCATTTTGTCAGCCTGTAGTCCCTACTTCC
GAGCTATGTTTACAGGAGAATTGGCAGAGAGCCGTCAGACAGAAGTAGTGATCCGAGACATTGACGAGAG
GGCTATGGAATTACTGATTGACTTTGCGTATACCTCCCAGATAACAGTAGAAGAGGGCAATGTTCAGACT
CTTCTGCCAGCTGCTTGCCTCCTCCAGCTGGCAGAAATACAGGAAGCCTGCTGTGAATTCTTAAAGAGAC
AATTAGATCCTTCTAACTGCCTGGGCATTCGGGCTTTTGCTGACACACATTCATGTCGTGAGTTGCTAAG
GATAGCAGACAAGTTCACCCAACATAACTTTCAAGAGGTAATGGAGAGTGAAGAGTTCATGTTGCTTCCA
GCCAATCAACTCATTGATATAATATCCAGTGATGAGCTAAACGTTCGCAGTGAAGAACAAGTGTTCAATG
CAGTGATGGCCTGGGTCAAATACAGTATTCAGGAAAGACGTCCTCAATTACCCCAGGTGCTGCAGCATGT
TCGTTTGCCTTTGCTTAGTCCCAAGTTCCTGGTCGGCACAGTAGGCTCTGATCCCCTCATCAAAAGTGAT
GAAGAATGCAGAGACTTGGTAGATGAGGCTAAAAACTACCTCCTATTGCCGCAAGAACGACCACTAATGC
AAGGACCAAGGACGAGACCACGGAAACCTATCCGATGTGGGGAAGTACTCTTTGCAGTTGGTGGTTGGTG
CAGTGGAGATGCCATTTCCAGTGTTGAACGATATGATCCACAGACCAATGAATGGAGAATGGTGGCTTCA
ATGAGCAAAAGGAGATGCGGAGTTGGGGTCAGTGTTCTTGATGATCTGTTATATGCAGTAGGAGGCCATG
ATGGATCCTCTTATCTCAATAGTGTTGAAAGGTATGACCCCAAAACAAACCAGTGGAGCAGTGATGTGGC
CCCTACAAGCACCTGCAGGACAAGTGTTGGTGTAGCAGTACTTGGAGGCTTTCTTTATGCTGTGGGTGGC
CAGGATGGTGTGTCTTGCCTCAACATTGTTGAGAGGTATGATCCGAAGGAGAACAAGTGGACTCGGGTAG
CTTCTATGAGTACCAGAAGACTAGGTGTGGCTGTGGCTGTGTTAGGAGGGTTCTTATATGCTGTAGGTGG
CTCTGACGGGACATCTCCTCTCAACACAGTGGAACGTTACAATCCTCAGGAAAACAGATGGCACACTATA
GCCCCTATGGGGACCCGGAGGAAACACCTAGGCTGTGCAGTATATCAGGACATGATCTATGCTGTAGGAG
GTAGAGATGACACTACAGAGCTGAGCAGTGCTGAGAGATACAACCCCAGAACCAACCAGTGGTCTCCAGT
GGTGGCCATGACATCACGCCGTAGTGGAGTTGGCCTGGCAGTGGTCAATGGACAGCTCATGGCAGTAGGA
GGTTTTGATGGCACAACATACTTGAAGACCATAGAAGTTTTTGATCCTGATGCCAATACATGGAGGTTAT
ATGGCGGGATGAATTACCGTCGGCTAGGGGGTGGCGTAGGAGTTATTAAAATGACACATTGTGAATCCCA
TATTTGGTGA

Translation (609 aa):
MEGKPMRRCTNIRPGETGMDVTSRCTLGDPNKLPEGVPQPARMPYISDKHPRQTLEVINLLRKHRELCDV
VLVVGAKKIYAHRVILSACSPYFRAMFTGELAESRQTEVVIRDIDERAMELLIDFAYTSQITVEEGNVQT
LLPAACLLQLAEIQEACCEFLKRQLDPSNCLGIRAFADTHSCRELLRIADKFTQHNFQEVMESEEFMLLP
ANQLIDIISSDELNVRSEEQVFNAVMAWVKYSIQERRPQLPQVLQHVRLPLLSPKFLVGTVGSDPLIKSD
EECRDLVDEAKNYLLLPQERPLMQGPRTRPRKPIRCGEVLFAVGGWCSGDAISSVERYDPQTNEWRMVAS
MSKRRCGVGVSVLDDLLYAVGGHDGSSYLNSVERYDPKTNQWSSDVAPTSTCRTSVGVAVLGGFLYAVGG
QDGVSCLNIVERYDPKENKWTRVASMSTRRLGVAVAVLGGFLYAVGGSDGTSPLNTVERYNPQENRWHTI
APMGTRRKHLGCAVYQDMIYAVGGRDDTTELSSAERYNPRTNQWSPVVAMTSRRSGVGLAVVNGQLMAVG
GFDGTTYLKTIEVFDPDANTWRLYGGMNYRRLGGGVGVIKMTHCESHIW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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