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Report for CCDS15858.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15858.1 Public Mus musculus 2 Slc27a4 23 108 98 CCDS HistoryNCBI Gene:26569Re-query CCDS DB by CCDS ID:15858.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15858.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080065.2 ENSMUSP00000078971.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080065.2Link to Ensembl Protein Viewer:ENSMUSP00000078971.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000080065Re-query CCDS DB by Protein ID:ENSMUSP00000078971
Original member Current member NCBI NM_011989.5 NP_036119.1 Accepted alive Link to Nucleotide Sequence:NM_011989.5Link to Protein Sequence:NP_036119.1Re-query CCDS DB by Nucleotide ID:NM_011989Re-query CCDS DB by Protein ID:NP_036119Link to BLAST:NP_036119.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036119.1 643 Q91VE0 643 100% 0 0

Chromosomal Locations for CCDS 15858.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 29804166 29804326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29805616 29806010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29807356 29807514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29809662 29809731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29809836 29809927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29810861 29810970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29811186 29811395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29811569 29811695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29812265 29812402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29812552 29812716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29812788 29812934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29815576 29815733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1932 nt):
ATGCTACTTGGAGCATCTCTGGTGGGGGCGCTACTGTTCTCCAAGCTAGTGCTGAAGCTGCCCTGGACCC
AGGTGGGATTCTCCCTGTTGCTCCTGTACTTGGGGTCTGGTGGCTGGCGTTTCATCCGGGTCTTCATCAA
GACGGTCAGGAGAGATATCTTTGGTGGCATGGTGCTCCTGAAGGTGAAGACCAAGGTGCGACGGTACCTT
CAGGAGCGGAAGACGGTGCCCCTGCTGTTTGCTTCAATGGTACAGCGCCACCCGGACAAGACAGCCCTGA
TTTTCGAGGGCACAGACACTCACTGGACCTTCCGCCAGCTGGATGAGTACTCCAGTAGTGTGGCCAACTT
CCTGCAGGCCCGGGGCCTGGCCTCAGGCAATGTAGTTGCCCTCTTTATGGAAAACCGCAATGAGTTTGTG
GGTCTGTGGCTAGGCATGGCCAAGCTGGGCGTGGAGGCGGCTCTCATCAACACCAACCTTAGGCGGGATG
CCCTGCGCCACTGTCTTGACACCTCAAAGGCACGAGCTCTCATCTTTGGCAGTGAGATGGCCTCAGCTAT
CTGTGAGATCCATGCTAGCCTGGAGCCCACACTCAGCCTCTTCTGCTCTGGATCCTGGGAGCCCAGCACA
GTGCCCGTCAGCACAGAGCATCTGGACCCTCTTCTGGAAGATGCCCCGAAGCACCTGCCCAGTCACCCAG
ACAAGGGTTTTACAGATAAGCTCTTCTACATCTACACATCGGGCACCACGGGGCTACCCAAAGCTGCCAT
TGTGGTGCACAGCAGGTATTATCGTATGGCTTCCCTGGTGTACTATGGATTCCGCATGCGGCCTGATGAC
ATTGTCTATGACTGCCTCCCCCTCTACCACTCAGCAGGAAACATCGTGGGGATTGGCCAGTGCTTACTCC
ACGGCATGACTGTGGTGATCCGGAAGAAGTTCTCAGCCTCCCGGTTCTGGGATGATTGTATCAAGTACAA
CTGCACAATTGTACAGTACATTGGCGAGCTCTGCCGCTACCTCCTGAACCAGCCACCCCGTGAGGCTGAG
TCTCGGCACAAGGTGCGCATGGCACTGGGCAACGGTCTCCGGCAGTCCATCTGGACCGACTTCTCCAGCC
GTTTCCACATCCCCCAGGTGGCTGAGTTCTATGGGGCCACTGAATGCAACTGTAGCCTGGGCAACTTTGA
CAGCCGGGTGGGGGCCTGTGGCTTCAATAGCCGCATCCTGTCCTTTGTGTACCCTATCCGTTTGGTACGT
GTCAATGAGGATACCATGGAACTGATCCGGGGACCCGATGGAGTCTGCATTCCCTGTCAACCAGGTCAGC
CAGGCCAGCTGGTGGGTCGCATCATCCAGCAGGACCCTCTGCGCCGTTTCGACGGGTACCTCAACCAGGG
TGCCAACAACAAGAAGATTGCTAATGATGTCTTCAAGAAGGGGGACCAAGCCTACCTCACTGGTGACGTC
CTGGTGATGGATGAGCTGGGTTACCTGTACTTCCGAGATCGCACTGGGGACACGTTCCGCTGGAAAGGGG
AGAATGTATCTACCACTGAGGTGGAGGGCACACTCAGCCGCCTGCTTCATATGGCAGATGTGGCAGTTTA
TGGTGTTGAGGTGCCAGGAACTGAAGGCCGAGCAGGAATGGCTGCCGTTGCAAGTCCCATCAGCAACTGT
GACCTGGAGAGCTTTGCACAGACCTTGAAAAAGGAGCTGCCTCTGTATGCCCGCCCCATCTTCCTGCGCT
TCTTGCCTGAGCTGCACAAGACAGGGACCTTCAAGTTCCAGAAGACAGAGTTGCGGAAGGAGGGCTTTGA
CCCATCTGTTGTGAAAGACCCGCTGTTCTATCTGGATGCTCGGAAGGGCTGCTACGTTGCACTGGACCAG
GAGGCCTATACCCGCATCCAGGCAGGCGAGGAGAAGCTGTGA

Translation (643 aa):
MLLGASLVGALLFSKLVLKLPWTQVGFSLLLLYLGSGGWRFIRVFIKTVRRDIFGGMVLLKVKTKVRRYL
QERKTVPLLFASMVQRHPDKTALIFEGTDTHWTFRQLDEYSSSVANFLQARGLASGNVVALFMENRNEFV
GLWLGMAKLGVEAALINTNLRRDALRHCLDTSKARALIFGSEMASAICEIHASLEPTLSLFCSGSWEPST
VPVSTEHLDPLLEDAPKHLPSHPDKGFTDKLFYIYTSGTTGLPKAAIVVHSRYYRMASLVYYGFRMRPDD
IVYDCLPLYHSAGNIVGIGQCLLHGMTVVIRKKFSASRFWDDCIKYNCTIVQYIGELCRYLLNQPPREAE
SRHKVRMALGNGLRQSIWTDFSSRFHIPQVAEFYGATECNCSLGNFDSRVGACGFNSRILSFVYPIRLVR
VNEDTMELIRGPDGVCIPCQPGQPGQLVGRIIQQDPLRRFDGYLNQGANNKKIANDVFKKGDQAYLTGDV
LVMDELGYLYFRDRTGDTFRWKGENVSTTEVEGTLSRLLHMADVAVYGVEVPGTEGRAGMAAVASPISNC
DLESFAQTLKKELPLYARPIFLRFLPELHKTGTFKFQKTELRKEGFDPSVVKDPLFYLDARKGCYVALDQ
EAYTRIQAGEEKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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