NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS2743.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2743.1 Public Homo sapiens 3 ALS2CL 24 110 108 CCDS HistoryNCBI Gene:259173Re-query CCDS DB by CCDS ID:2743.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2743.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000318962.9 ENSP00000313670.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000318962.9Link to Ensembl Protein Viewer:ENSP00000313670.4Re-query CCDS DB by Nucleotide ID:ENST00000318962Re-query CCDS DB by Protein ID:ENSP00000313670
Original member Current member EBI ENST00000415953.5 ENSP00000413223.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000415953.5Link to Ensembl Protein Viewer:ENSP00000413223.1Re-query CCDS DB by Nucleotide ID:ENST00000415953Re-query CCDS DB by Protein ID:ENSP00000413223
Original member Current member NCBI NM_001190707.2 NP_001177636.1 Accepted alive Link to Nucleotide Sequence:NM_001190707.2Link to Protein Sequence:NP_001177636.1Re-query CCDS DB by Nucleotide ID:NM_001190707Re-query CCDS DB by Protein ID:NP_001177636Link to BLAST:NP_001177636.1
Original member Current member NCBI NM_147129.5 NP_667340.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_147129.5Link to Protein Sequence:NP_667340.2Re-query CCDS DB by Nucleotide ID:NM_147129Re-query CCDS DB by Protein ID:NP_667340Link to BLAST:NP_667340.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177636.1 953 Q60I27-1 953 100% 0 0
NP_667340.2 953 Q60I27-1 953 100% 0 0

Chromosomal Locations for CCDS 2743.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 46670984 46671064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46671488 46671584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46671884 46672033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46672140 46672201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46673339 46673381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46674566 46674739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46675618 46675686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46676245 46676402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46676642 46676738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46676849 46677022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46678259 46678389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46679210 46679287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46680430 46680541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46681246 46681407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46681500 46681598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46682029 46682094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46683130 46683326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46683782 46683848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46683989 46684047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46685525 46685644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46686308 46686439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46686983 46687148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46687619 46687684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46688098 46688296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46689338 46689440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2862 nt):
ATGTGCAACCCTGAGGAGGCAGCTCTGCTGCGGCTGGAGGAGGTCTTCTCAGCCACCCTCGCCCATGTCA
ACAGCCTTGTCCTCCAGCCCCTGCTCCCAGCCGCCCCAGATCCCTCGGATCCCTGGGGCAGAGAGTGCCT
GCGGCTCTTGCAACAGCTGCACAAGAGCTCCCAGCAACTCTGGGAGGTGACGGAGGAAAGCCTGCACTCA
CTGCAGGAGAGGCTGCGTTACCCGGACTCCACCGGTCTGGAGTCCCTGCTGCTGCTGCGAGGTGCTGACC
GTGTACTGCAGGCCCACATAGAGTACATTGAGTCCTACACAAGCTGCATGGTGGTGCAGGCCTTCCAGAA
GGCAGCAAAGAGGAGAAGCGAGTACTGGCGGGGCCAGCGGAAGGCGCTGCGGCAGCTGCTTTCAGGTGTG
AGCTCAGAGGGCTCGGTGGGCGCATCGCTGGGCCAGGCCCTCCACCAGCCACTCGCCCATCACGTGCAAC
AGTACGTGCTCCTCCTGCTGAGCCTCGGGGACACCATTGGGGAGCATCACCCAACCCGGGAGCTGGTGGT
GAACGCAGTCACCCTCTTTGGGAACCTGCAGTCCTTCATGAAGCAGGAGTTGGACCAGGCTGTGGCCACA
CAGGCTCTCTGGCACACCCTGAGAGGCCGGCTGAGGGATGTGCTCTGCACCCCTGCTCACAGACTCCTTC
AGGACAGCCAGGACGTACCCGTGACGGTCGCACCGTTGCGGGCTGAGCGTGTGCTGCTCTTTGATGATGC
CCTCGTCCTGCTGCAGGGCCACAATGTCCACACCTTTGATCTGAAGCTGGTGTGGGTGGATCCTGGGCAG
GACGGGTGCACGTTTCACCTCCTCACGCCCGAAGAAGAGTTCTCCTTTTGTGCCAAGGACTCCCAGGGCC
AGGCAGTCTGGCAGTGGAAGGTGACCTGGGCTGTTCACCAGGCCCTGCATGGGAAGAAGGACTTCCCCGT
GCTGGGGGCTGGCCTGGAGCCCTCCCAGCCTCCCGACTGCCGCTGCGCAGAATATACCTTCCAGGCAGAG
GGCCGGCTCTGCCAGGCCACCTACGAGGGCGAGTGGTGCAGGGGCCGGCCCCACGGCAAGGGAACCCTGA
AATGGCCGGATGGGCGGAATCACGTGGGGAATTTCTGCCAGGGCCTGGAGCATGGCTTCGGCATCCGCCT
GCTGCCCCAGGCCTCTGAGGACAAGTTCGACTGTTACAAGTGTCACTGGCGAGAAGGCAGCATGTGTGGC
TACGGCATCTGTGAGTACAGCACCGACGAGGTGTACAAGGGCTACTTCCAGGAGGGCCTGCGGCACGGAT
TTGGGGTCCTTGAGAGTGGTCCGCAGGCCCCCCAGCCCTTCAGGTACACGGGCCACTGGGAGAGGGGCCA
GAGGAGCGGCTATGGCATTGAGGAGGATGGTGACAGAGGTGAGCGCTACATTGGCATGTGGCAGGCTGGT
CAGCGCCACGGCCCAGGGGTCATGGTCACCCAGGCAGGTGTCTGCTACCAGGGCACCTTCCAGGCGGACA
AGACGGTGGGCCCGGGCATCCTCCTCTCTGAAGACGACTCCCTGTATGAGGGCACCTTCACCAGGGACCT
GACCCTCATGGGGAAGGGCAAGGTCACCTTCCCCAATGGCTTCACCCTGGAGGGCTCGTTCGGCAGTGGG
GCAGGGAGAGGACTGCACACACAGGGTGTGCTGGACACGGCTGCCCTCCCACCAGACCCGAGCAGTACCT
GCAAGAGGCAGCTGGGCGTGGGTGCCTTCCCCGTGGAAAGCCGCTGGCAGGGAGTCTACAGCCCCTTCCG
GGACTTTGTGTGTGCTGGCTGCCCCAGGGACCTGCAGGAGGCCCTGCTGGGCTTCGACGTGCAGAGCTCC
AGGGAGCTGCGTAGGTCTCAGGATTACCTGTCCTGCGAGAGGACCCACCCTGAGGACAGTGTGGGCAGTA
TGGAAGACATCCTGGAGGAGCTGCTGCAGCACCGGGAGCCCAAGGCCCTGCAGCTGTACCTCAGGAAGGC
TCTGAGCAACTCACTGCACCCCCTGGGAAAGCTGCTCCGGACACTGATGCTGACCTTCCAGGCTACCTAC
GCAGGTGTCGGGGCCAACAAGCACCTGCAGGAGCTGGCCCAGGAGGAGGTGAAGCAGCATGCCCAGGAAC
TCTGGGCTGCCTACAGGGGTCTGCTGCGAGTTGCCTTAGAGCGCAAGGGCCAGGCCCTGGAGGAGGATGA
AGACACAGAGACAAGGGACCTCCAGGTGCATGGATTGGTGCTGCCCCTCATGCTGCCCAGCTTCTACTCA
GAGCTCTTCACGCTCTACCTGCTGCTTCATGAGCGGGAGGACAGCTTCTACAGCCAGGGCATTGCCAACT
TGAGCCTCTTTCCTGATACCCAACTGCTCGAGTTCCTGGATGTGCAGAAGCACTTGTGGCCCCTCAAGGA
CCTCACGCTGACGAGCAATCAGAGGTACTCCCTGGTCAGGGACAAGTGTTTCCTGTCAGCCACCGAGTGC
CTGCAGAAGATCATGACCACGGTGGACCCACGGGAGAAGCTGGAGGTGCTGGAGAGGACATACGGGGAAA
TTGAGGGCACGGTGTCGAGGGTATTGGGCCGGGAGTACAAGCTGCCCATGGACGACCTGCTGCCACTTCT
CATCTACGTGGTGTCGCGCGCCCGAATTCAGCACCTGGGAGCCGAGATCCACCTGATCCGTGACATGATG
GACCCCAACCACACAGGAGGCCTGTATGACTTCCTGCTCACAGCCCTGGAGTCCTGTTACGAGCACATCC
AGAAAGAAGACATGAGGCTGCACCGCTTACCTGGCCACTGGCACTCCAGGGAGCTCTGGTAG

Translation (953 aa):
MCNPEEAALLRLEEVFSATLAHVNSLVLQPLLPAAPDPSDPWGRECLRLLQQLHKSSQQLWEVTEESLHS
LQERLRYPDSTGLESLLLLRGADRVLQAHIEYIESYTSCMVVQAFQKAAKRRSEYWRGQRKALRQLLSGV
SSEGSVGASLGQALHQPLAHHVQQYVLLLLSLGDTIGEHHPTRELVVNAVTLFGNLQSFMKQELDQAVAT
QALWHTLRGRLRDVLCTPAHRLLQDSQDVPVTVAPLRAERVLLFDDALVLLQGHNVHTFDLKLVWVDPGQ
DGCTFHLLTPEEEFSFCAKDSQGQAVWQWKVTWAVHQALHGKKDFPVLGAGLEPSQPPDCRCAEYTFQAE
GRLCQATYEGEWCRGRPHGKGTLKWPDGRNHVGNFCQGLEHGFGIRLLPQASEDKFDCYKCHWREGSMCG
YGICEYSTDEVYKGYFQEGLRHGFGVLESGPQAPQPFRYTGHWERGQRSGYGIEEDGDRGERYIGMWQAG
QRHGPGVMVTQAGVCYQGTFQADKTVGPGILLSEDDSLYEGTFTRDLTLMGKGKVTFPNGFTLEGSFGSG
AGRGLHTQGVLDTAALPPDPSSTCKRQLGVGAFPVESRWQGVYSPFRDFVCAGCPRDLQEALLGFDVQSS
RELRRSQDYLSCERTHPEDSVGSMEDILEELLQHREPKALQLYLRKALSNSLHPLGKLLRTLMLTFQATY
AGVGANKHLQELAQEEVKQHAQELWAAYRGLLRVALERKGQALEEDEDTETRDLQVHGLVLPLMLPSFYS
ELFTLYLLLHEREDSFYSQGIANLSLFPDTQLLEFLDVQKHLWPLKDLTLTSNQRYSLVRDKCFLSATEC
LQKIMTTVDPREKLEVLERTYGEIEGTVSRVLGREYKLPMDDLLPLLIYVVSRARIQHLGAEIHLIRDMM
DPNHTGGLYDFLLTALESCYEHIQKEDMRLHRLPGHWHSRELW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH