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Report for CCDS16252.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16252.1 Public Mus musculus 2 Or8k23 23 108 98 CCDS HistoryNCBI Gene:259020Re-query CCDS DB by CCDS ID:16252.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16252.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099893.4 ENSMUSP00000097478.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099893.4Link to Ensembl Protein Viewer:ENSMUSP00000097478.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099893Re-query CCDS DB by Protein ID:ENSMUSP00000097478
Original member Current member EBI ENSMUST00000216547.1 ENSMUSP00000149545.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216547.1Link to Ensembl Protein Viewer:ENSMUSP00000149545.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216547Re-query CCDS DB by Protein ID:ENSMUSP00000149545
Original member Current member NCBI NM_147018.2 NP_667229.2 Accepted alive Link to Nucleotide Sequence:NM_147018.2Link to Protein Sequence:NP_667229.2Re-query CCDS DB by Nucleotide ID:NM_147018Re-query CCDS DB by Protein ID:NP_667229Link to BLAST:NP_667229.2

Chromosomal Locations for CCDS 16252.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 86355439 86356380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGGAAAATCAGAACCTCTCTGTGCTGAATGAGTTCATACTTGTGGGCATCACAGATCGCCCTGAACTAC
AGGCTCCCTTTTTTGTACTATTCTTTCTCATCTATGTTGCCTCTGTTGTGGGAAATTTGGGCATGATTGT
CCTTACCAAGTTGGATGAGAGGTTGCAAACACCTATGTACTTTTTTCTCAGACATCTAGCTTTCATTGAT
TTTGGGTATTCAACAGCTGTGGGACCAAAAACGTTGGTAAGCTTTGTAACAAATAAAAATACCATCCCCT
ATAATTGGTGTGCATTCCAGCTATCTTTGTTCATCTTCTTCATCATTAGTGAGTTATTTGTTCTGTCAGC
TATGGCTTATGACCGCTATGTGGCCATTTGCAACCCGCTGCTCTATACTGTCATCATGTCACAGAAAGTC
TGCTGGGTATTGGTGACAATTCCTTATCTCTTCAGTGCCTTTCTTTCTCTGATCACCACCATCAAAATTT
TTATTTCATCCTTCTGTGGCTATAATGTTATTAGCCATTTTTATTGTGACAGTCTTCCCTTACTGACCTT
GATCTGTTCAGGCACACGTGACATTGAACTTATCATATTGATCTTCTCGGCATTTAATTTGATTTCATCC
CTTTCTGTAGTTCTCGTGTCCTATACCTTTATCCTGGTGGCCATTCTCAGGATGAACTCTGCAGAAGGCA
GACATAAGGCTTTCTCTACCTGTGGGTCTCACCTTACAGTGGTAGTTATATTGTATGGGACTCTGTCTTT
TATGTATATACAGCCCAAATCTAGCCACTCTTTTGAGAATGATAAAATGGCCTCTGTGTTCTACACCTTG
GTAATTCCTGTGCTAAATCCCATTATCTACAGCTTGAGAAATAAAGAGGTAAAAGGTGCCCTTCAAAAGC
TATGGAAAAATGTCTGTAAAGTTTGTATTTAA

Translation (313 aa):
MENQNLSVLNEFILVGITDRPELQAPFFVLFFLIYVASVVGNLGMIVLTKLDERLQTPMYFFLRHLAFID
FGYSTAVGPKTLVSFVTNKNTIPYNWCAFQLSLFIFFIISELFVLSAMAYDRYVAICNPLLYTVIMSQKV
CWVLVTIPYLFSAFLSLITTIKIFISSFCGYNVISHFYCDSLPLLTLICSGTRDIELIILIFSAFNLISS
LSVVLVSYTFILVAILRMNSAEGRHKAFSTCGSHLTVVVILYGTLSFMYIQPKSSHSFENDKMASVFYTL
VIPVLNPIIYSLRNKEVKGALQKLWKNVCKVCI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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