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Report for CCDS15524.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15524.1 Public Mus musculus 1 Or10j3 23 108 98 CCDS HistoryNCBI Gene:258880Re-query CCDS DB by CCDS ID:15524.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15524.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057548.1 ENSMUSP00000053317.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057548.1Link to Ensembl Protein Viewer:ENSMUSP00000053317.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000057548Re-query CCDS DB by Protein ID:ENSMUSP00000053317
Original member Current member EBI ENSMUST00000215844.1 ENSMUSP00000149832.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215844.1Link to Ensembl Protein Viewer:ENSMUSP00000149832.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215844Re-query CCDS DB by Protein ID:ENSMUSP00000149832
Original member Current member EBI ENSMUST00000216603.1 ENSMUSP00000150815.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216603.1Link to Ensembl Protein Viewer:ENSMUSP00000150815.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216603Re-query CCDS DB by Protein ID:ENSMUSP00000150815
Original member Current member NCBI NM_001001809.2 NP_001001809.2 Accepted alive Link to Nucleotide Sequence:NM_001001809.2Link to Protein Sequence:NP_001001809.2Re-query CCDS DB by Nucleotide ID:NM_001001809Re-query CCDS DB by Protein ID:NP_001001809Link to BLAST:NP_001001809.2

Chromosomal Locations for CCDS 15524.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 173203358 173204299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGCCAAAGAAAAACTCCACAGTTGTGGCCGAGTTCCTCTTTGAAGGTTTCTCCAGCTTTGATTGGCAGC
ACAGGCTTGGCTTCTTTATTGTGTTCCTAACGCTGTACCTTCTGACTCTGTCTGGCAACATGATCATTGT
GACAATTATTCGTCTGGACCGCCATCTCCATACACCCATGTACTTTTTTCTAAGCATGCTCTCCATCTCT
GAGACTTTCTATACCATTGCCATTATTCCACGAATGCTAGCTGGCCTCCTTAATCCTTACCAGGCCATAG
ATATTCAAGGTTGTGCAACACAGCTCTTCTTTTATCTAACTTTTGGCATCAACAACTGTTTTCTCCTCAC
AGCAATGGGTTATGACCGCTATGTGGCCATCTGCAATCCTCTAAGGTATTCGGTCATCATGGGTAAGAAG
GCCTGTATCCTCTTAGCATCTGGGTCACTGGGAATTGGCCTGAGCATGGCTATTGTCCAGGTTACATCAG
TGTTTGGCCTACCATTCTGTGATGGGTTTGTTATTGCCCACTTCTTCTGTGATGTGAGACCCCTGCTGAA
ACTGGCCTGCACAGATACCACTATCAATGAGATAATCAACTTTATTGTCAGCGTGTGTGTCCTTGTGTTA
CCCATGAGTCTTGTCTTCATCTCCTATGTTGTTATCATCTCTACCATCCTTAAGATTGCCTCAGCTGAAG
GCCGGAAGAAGGCCTTTGCCACCTGTGCCTCCCACCTTACTGTGGTCATCATCCACTATGGCTGTGCCTC
AATAATCTACCTAAAACCAAAGTCCCAGACTTCCCTAGGGCAGGACAGGCTCATCTCAGTGACTTACACT
GTCATCACCCCTCTACTGAACCCAGTGGTATACAGTTTGAGAAACAAAGAGGTCAAAGAGGCTCTACGAA
AGGCCATAGGACGTAGGCCTCTTTCCTCTTAA

Translation (313 aa):
MPKKNSTVVAEFLFEGFSSFDWQHRLGFFIVFLTLYLLTLSGNMIIVTIIRLDRHLHTPMYFFLSMLSIS
ETFYTIAIIPRMLAGLLNPYQAIDIQGCATQLFFYLTFGINNCFLLTAMGYDRYVAICNPLRYSVIMGKK
ACILLASGSLGIGLSMAIVQVTSVFGLPFCDGFVIAHFFCDVRPLLKLACTDTTINEIINFIVSVCVLVL
PMSLVFISYVVIISTILKIASAEGRKKAFATCASHLTVVIIHYGCASIIYLKPKSQTSLGQDRLISVTYT
VITPLLNPVVYSLRNKEVKEALRKAIGRRPLSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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