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Report for CCDS29673.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29673.1 Public Mus musculus 19 Or9q2 23 108 98 CCDS HistoryNCBI Gene:258736Re-query CCDS DB by CCDS ID:29673.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29673.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061993.2 ENSMUSP00000053465.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061993.2Link to Ensembl Protein Viewer:ENSMUSP00000053465.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000061993Re-query CCDS DB by Protein ID:ENSMUSP00000053465
Original member Current member EBI ENSMUST00000217384.1 ENSMUSP00000149151.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217384.1Link to Ensembl Protein Viewer:ENSMUSP00000149151.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217384Re-query CCDS DB by Protein ID:ENSMUSP00000149151
Original member Current member NCBI NM_146741.1 NP_666952.1 Accepted alive Link to Nucleotide Sequence:NM_146741.1Link to Protein Sequence:NP_666952.1Re-query CCDS DB by Nucleotide ID:NM_146741Re-query CCDS DB by Protein ID:NP_666952Link to BLAST:NP_666952.1

Chromosomal Locations for CCDS 29673.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 13794665 13795609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGGCTGGGAGGAATTACACCTTCGTGACTGAGTTCTTTCTGACTGCATTCACTGAACATCCTGAGTGGG
GGCTCCCTCTCTTCCTTTTATTTTTGAGTTTCTACCTCGCTACCCTGCTGGGGAATACAGGAATGATCAT
TCTAATCCAGAAGAACCGCCGACTTCAAACACCAATGTACTTCTTCCTCAGCCACCTTTCCTTTGTGGAC
ATCTGCTACTCCTCTGTCATCATCCCTCAGATGCTGGCTGTGCTGTGGGAACATGGCTCAACCATTTCTC
AAGTTCGCTGTGCAGTTCAATTCTTCCTCTTTACCTTCTTTGCTTCTATTGACTGCTACCTCTTGGCAAT
CATGGCCTACGACCGCTATGTGGCTGTGTGCCAACCATTGCTTTATGTCACCATCATGACTGAGAAGGCC
CGTGTAGGTCTGGTAACTGGGGCATATGTGGCTGGTTTTTCCAGTGGCTTTATTCGGACTGTCACAGCCT
TCACTCTTTCATTCTGTGGAAACAATGAGATCAATTTCATATTCTGTGACCTCCCCCCATTGTTAAAACT
CGTATGTGGGGACAGCTACATTCAAGAGGTGGTGATAATTGTTTTTGCCATTTTTGTCATGCCTGCTTGC
ATTGTGGTGATCTCTGTGTCCTATCTGTTTATCATTGTGGCCATTATGCAAATCCGCTCAGCTGGAGGCC
GAGCCAAAACTTTCTCTACCTGCACCTCCCACCTCACTGCTGTAGCTCTCTTCTTTGGTACTCTTATCTT
CATGTACTTGAGAGATAATACAGATCAGTTCTCGGAGAGGGACAGAGTTGTGTCTGTGTTCTATACAGTG
GTGACCCCATTACTGAATCCACTCATCTATAGCCTGAGAAATAAAGAGGTAAAAGAGGCAATTACGAAAT
CTCTGAGAAGATCAAAGATTTCCAGGGCACCCTAG

Translation (314 aa):
MAGRNYTFVTEFFLTAFTEHPEWGLPLFLLFLSFYLATLLGNTGMIILIQKNRRLQTPMYFFLSHLSFVD
ICYSSVIIPQMLAVLWEHGSTISQVRCAVQFFLFTFFASIDCYLLAIMAYDRYVAVCQPLLYVTIMTEKA
RVGLVTGAYVAGFSSGFIRTVTAFTLSFCGNNEINFIFCDLPPLLKLVCGDSYIQEVVIIVFAIFVMPAC
IVVISVSYLFIIVAIMQIRSAGGRAKTFSTCTSHLTAVALFFGTLIFMYLRDNTDQFSERDRVVSVFYTV
VTPLLNPLIYSLRNKEVKEAITKSLRRSKISRAP


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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