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Report for CCDS16306.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16306.1 Public Mus musculus 2 Or5w16 23 108 98 CCDS HistoryNCBI Gene:258635Re-query CCDS DB by CCDS ID:16306.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16306.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000217572.1 ENSMUSP00000149645.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217572.1Link to Ensembl Protein Viewer:ENSMUSP00000149645.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217572Re-query CCDS DB by Protein ID:ENSMUSP00000149645
Original member Current member EBI ENSMUST00000214723.1 ENSMUSP00000149706.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214723.1Link to Ensembl Protein Viewer:ENSMUSP00000149706.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214723Re-query CCDS DB by Protein ID:ENSMUSP00000149706
Original member Current member NCBI NM_146642.2 NP_666853.2 Accepted alive Link to Nucleotide Sequence:NM_146642.2Link to Protein Sequence:NP_666853.2Re-query CCDS DB by Nucleotide ID:NM_146642Re-query CCDS DB by Protein ID:NP_666853Link to BLAST:NP_666853.2

Chromosomal Locations for CCDS 16306.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 87746198 87747133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGGATGAAGGAAACTGCTCCTCCATCACTGAATTTATTCTACTGGGAATCACTGATGACCCTAGCATGA
AAGTGGTTCTATTCATTTCATTTCTTATCATCTATCTCATTATTCTTGTGGCAAATATTGGAATTATTGT
TTTGATCAGAATAGATCCTCAGCTTCACACACCAATGTACTTCTTCCTCAGCCATCTCTCTTTCTCAGAC
CTCTGTTATTCCACTGCTGTTGGACCAAAGATGCTGGTAGATTTACTGGCCAAACACAAATCTTTATCTT
TTTTGGGCTGTGCATTACAGTTTTTCTTTACCTGTGTCTTTATAGATGTTGAGTGTGTGCTGCTGGCAGT
GATGGCCTTTGATCGGTACAAGGCCATCAGCAATCCCCTGATGTATGTTGTAGACATGTCCAGTAGATTT
TGTTACCAGCTTCTGGCTGGAGTTTATGTATTAGCAATGATAGATACTCTGATGCAAACTATAATAACCT
TTGGGTTGTGTTTCTGTAGGTCAAATGAGATTAATCATTTCTTCTGTGATCTTCCACCTATTCTGTTATT
ATCTTGCTCAGATATATATGTCAATGAATTAGCATTGTTTGTGTTTTCTGGGTTTGTTGAGTTGTGCACT
ATTTCAGGACTTCTTGTTTCTTACAGTTACATTATTGCATCAGTCTTGAAGATCAGCTGTGATGAGGGCA
GATTCAAAGCTTTCTCCACTTGTGCCTCCCACCTGACTGCAGTTGCAATTTTTCAGGGAACTCTGCTCTT
TATGTATTTCCGGCCAAGTTCTTCATACTCCTTAGATCAAGATAAAACAACCTCATTGTTTTATACCCTG
GTGATACCTATGCTCAACCCTCTGATTTACAGCCTGAGAAACAAGGACGTGAAAGAAGCCCTGTACAAAC
TGAGAAATAAAAGGTCATTTAAATAA

Translation (311 aa):
MDEGNCSSITEFILLGITDDPSMKVVLFISFLIIYLIILVANIGIIVLIRIDPQLHTPMYFFLSHLSFSD
LCYSTAVGPKMLVDLLAKHKSLSFLGCALQFFFTCVFIDVECVLLAVMAFDRYKAISNPLMYVVDMSSRF
CYQLLAGVYVLAMIDTLMQTIITFGLCFCRSNEINHFFCDLPPILLLSCSDIYVNELALFVFSGFVELCT
ISGLLVSYSYIIASVLKISCDEGRFKAFSTCASHLTAVAIFQGTLLFMYFRPSSSYSLDQDKTTSLFYTL
VIPMLNPLIYSLRNKDVKEALYKLRNKRSFK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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