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Report for CCDS85655.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85655.1 Public Mus musculus 9 Or8b40 23 108 98 CCDS HistoryNCBI Gene:258475Re-query CCDS DB by CCDS ID:85655.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 85655.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000217286.1 ENSMUSP00000148913.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217286.1Link to Ensembl Protein Viewer:ENSMUSP00000148913.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217286Re-query CCDS DB by Protein ID:ENSMUSP00000148913
Original member Current member NCBI NM_146482.1 NP_666693.1 Accepted alive Link to Nucleotide Sequence:NM_146482.1Link to Protein Sequence:NP_666693.1Re-query CCDS DB by Nucleotide ID:NM_146482Re-query CCDS DB by Protein ID:NP_666693Link to BLAST:NP_666693.1

Chromosomal Locations for CCDS 85655.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 38115798 38116727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGGCTGTAGGAAATTCCTCTTCAGTGAAAGAATTTATTCTGCTGGGCTTGACACAAGAGCCAGAGCTCC
AGCTGCCGCTCTTCTTTCTCTTCTTGGGAATCTATGTGGTCTCTGTGATGGGGAACCTGGGCTTGATTGT
TCTGATTGTGTTGAATCCTCCCCTGCACACCCCCATGTACTACTTTCTCTTCAACCTTTCCTTCACAGAT
CTCTGCTACTCCACTGTCATAACCCCCAGAATGCTGGTGGGTTTTGTGAAGCAGAACACCATCTCTCATG
CAGAGTGTATGACTCAGCTTTTTTTCTTCTGCTTCTTTGTTATTGATGAATGCTACATTTTGACAGCAAT
GGCCTATGACAGATATGCTGCCATCTGTAAGCCCCTGCTTTACCAGGTCACCATGTCCCATCAGGTCTGC
CTCTTGATGACAGTGGGGATGTATGTGATGGGGCTTGTGGGTGCCATAGCCCACATTGTTTGCATGCTGA
GACTCACCTTCTGTGAAGGCCACATAATTAATCACTACATGTGTGACATACCCCCTCTCCTGAAGCTCTC
CTGCACAAGTACCTACATCAATGAGCTGGTAGTTTTCATTGTTGTGGGTGTCAATGTGATAGTTCCTACA
TTGACTATTTTTATTACTTATACCTTAATCCTTTCCAACATCCTCAGCATCCATTCTGCAGAAGGTAGAT
CAAAAGCCTTCAGTACCTGTGGCTCCCATGTGATAGCTGTTTCTCTTTTCTTTGGAGCTGCAGCCTTCAT
GTATCTTAAGCCTTCTAGTGCATCTGTGGATGAAGAGAAATTATCAACCATTTTTTATACCATTGTGGGC
CCAATGTTGAATCCTTTCATCTATAGCATAAGGAATAAGGATGTTCACATTGCACTGAGAAAAACTTTGA
AGAAAAGTATGTTTACTTAA

Translation (309 aa):
MAVGNSSSVKEFILLGLTQEPELQLPLFFLFLGIYVVSVMGNLGLIVLIVLNPPLHTPMYYFLFNLSFTD
LCYSTVITPRMLVGFVKQNTISHAECMTQLFFFCFFVIDECYILTAMAYDRYAAICKPLLYQVTMSHQVC
LLMTVGMYVMGLVGAIAHIVCMLRLTFCEGHIINHYMCDIPPLLKLSCTSTYINELVVFIVVGVNVIVPT
LTIFITYTLILSNILSIHSAEGRSKAFSTCGSHVIAVSLFFGAAAFMYLKPSSASVDEEKLSTIFYTIVG
PMLNPFIYSIRNKDVHIALRKTLKKSMFT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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