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Report for CCDS16332.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16332.1 Public Mus musculus 2 Or4p7 23 108 98 CCDS HistoryNCBI Gene:258203Re-query CCDS DB by CCDS ID:16332.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16332.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075640.1 ENSMUSP00000075066.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075640.1Link to Ensembl Protein Viewer:ENSMUSP00000075066.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000075640Re-query CCDS DB by Protein ID:ENSMUSP00000075066
Original member Current member EBI ENSMUST00000214040.2 ENSMUSP00000150036.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214040.2Link to Ensembl Protein Viewer:ENSMUSP00000150036.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214040Re-query CCDS DB by Protein ID:ENSMUSP00000150036
Original member Current member NCBI NM_001011868.1 NP_001011868.1 Accepted alive Link to Nucleotide Sequence:NM_001011868.1Link to Protein Sequence:NP_001011868.1Re-query CCDS DB by Nucleotide ID:NM_001011868Re-query CCDS DB by Protein ID:NP_001011868Link to BLAST:NP_001011868.1

Chromosomal Locations for CCDS 16332.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 88391249 88392220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGGACTATAGGACAAATATCACAGAATTTATTCTCCTAGGGCTTTCTCAGACAAAAGAAATAGAAGTTA
TCTGCTTTGTATTATTTTTACTTTGTTACATTGCAATTTTATTTGGGAACCTACTTATCATGATTTCTGT
CACATGGAGTCACCTCATCAATCAGCCTATGTATTTCTTTCTGAGTTACCTTGCACTTTCAGATTTGTGT
TACACCTCCACGGTGACACCCAAGCTGATTATCAACTTAGTCACAACAAAAAAGTCGATTTCCTACAATG
GTTGCATGACGCAGCTCTTCACTATGCACTTCTTTGGTGGCATTGAGGTCTTTATCCTTACAGGAATGGC
TTATGACCGCTATGTGGCCATCTGCAAGCCCTTGCACTACACCATCCTTATGAGCAGGCAGAAGTGTGAT
GCTGTGATTGCAGCTTCCTGTGCTGGGGGATTTCTGCATTCCTTTGGTCAATTTCTCCTGGCAGTCTTCT
TACCCTACTGTGGCCCCAATGAAATAGATCACTACTTCTGTGATGTGTACCCTCTGCTTAAACTGGCCTG
TACTGACACCAGAAAAATTGGTTTCTTGGTCATTGCTAACTCTGGCCTAATGGGCTTAGTGACTTTTGTG
GTCTTGTTGATATCATATGGTGTGATCTTATACACTGTCAGGTCTTACTCTGCAGAGAATCGTCGCAAAG
CTCTTTCCACATGCAGTTCACACATCACTGTGGTAGTCCTTTTCTTTGCTCCTCTATTGTTTATTTACAT
TCGACCAGCAACTACATTACCAGAAGACAAAGTATTTGCTCTCTTTTATACTATCATTGCCCCCATGCTC
AACCCCCTGATTTATACACTCAGAAACAAGGAGATGAAGAATGCCATCAAGAGACTATGTTACCTTATGT
CAGGGAGTGAAGGAAACAGGCTGAAGGGTGTCACTGTTTTCCACCATCACACAGTTTCTTGA

Translation (323 aa):
MDYRTNITEFILLGLSQTKEIEVICFVLFLLCYIAILFGNLLIMISVTWSHLINQPMYFFLSYLALSDLC
YTSTVTPKLIINLVTTKKSISYNGCMTQLFTMHFFGGIEVFILTGMAYDRYVAICKPLHYTILMSRQKCD
AVIAASCAGGFLHSFGQFLLAVFLPYCGPNEIDHYFCDVYPLLKLACTDTRKIGFLVIANSGLMGLVTFV
VLLISYGVILYTVRSYSAENRRKALSTCSSHITVVVLFFAPLLFIYIRPATTLPEDKVFALFYTIIAPML
NPLIYTLRNKEMKNAIKRLCYLMSGSEGNRLKGVTVFHHHTVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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