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Report for CCDS25031.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25031.1 Public Mus musculus 11 Or1d2 23 108 98 CCDS HistoryNCBI Gene:258153Re-query CCDS DB by CCDS ID:25031.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25031.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077794.3 ENSMUSP00000076967.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077794.3Link to Ensembl Protein Viewer:ENSMUSP00000076967.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000077794Re-query CCDS DB by Protein ID:ENSMUSP00000076967
Original member Current member EBI ENSMUST00000216362.1 ENSMUSP00000149922.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216362.1Link to Ensembl Protein Viewer:ENSMUSP00000149922.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216362Re-query CCDS DB by Protein ID:ENSMUSP00000149922
Original member Current member NCBI NM_001011851.1 NP_001011851.1 Accepted alive Link to Nucleotide Sequence:NM_001011851.1Link to Protein Sequence:NP_001011851.1Re-query CCDS DB by Nucleotide ID:NM_001011851Re-query CCDS DB by Protein ID:NP_001011851Link to BLAST:NP_001011851.1

Chromosomal Locations for CCDS 25031.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 74364671 74365609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGACGGAGGCAACCAGAGTGGGGACTCTGAGTTCCTCCTCCTGGGACTCTCGGAGGTTCCTGAGCATC
AGCGCATCCTATTCTGGACCTTCCTGTCCATGTACCTGGTCACAGTGGTGGGGAACGTGCTCATCATCCT
GGCCATTGGCTCTGACTCGCACCTGCACACTCCCATGTATTTCTTCCTGGCCAACCTCTCCTTCACTGAC
CTCTTCTTTGTCACCAACACTATCCCCAAGATGCTGGTGAGCCTTCAATCCCAGAACAAAGCTATCTCCT
ATCCAGGATGTCTGACACAGCTCTTCTTCCTGGTGTCTTTGGTAGCCTTGGACAATCTCATCCTGGCTGT
AATGGCATATGACCGTTATGTGGCCATCTGTCACCCCCTCCATTACACTACAGCCATGAGTCCCAAGCTC
TGTATCTTACTTCTCATCTTGTGCTGGGCCCTATCTATCCTTTATGGCCTCATCCACACCCTCCTCATGA
CCAGAGTAACCTTCTGTGGGTCTCGGAAAATCCACTACATCTTCTGCGAAATGTATGTCCTGCTGAGGCT
TGCATGCTCTAACACCCACATCAATCACATGATGCTGATCGCCACGGGCTGCTTCGTCTTCCTTGTTCCT
TTTGGATTCATGATCATGTCCTATATCTGCATTGTCAGAGCTATCCTCAAAATTCCTTCAGCCTCTAACA
AGTACAAAGCCTTTTCCACCTGTGCGTCCCATCTGGCTGTGGTGGCCCTCTTCTATGGGACACTGTGTAT
GGTGTATCTGAAACCCCTGCACACCTACTCCATGAAAGACTCAGTAGCCACTGTGATGTATGCAGTGGTG
ACACCCATGATGAACCCTTTCATCTACAGCCTGAGGAACAAGGACATGCACGGGGCTCTGGGAAGACTGC
TAAGGAAGCCACTTCAGAAGCTAACATGA

Translation (312 aa):
MDGGNQSGDSEFLLLGLSEVPEHQRILFWTFLSMYLVTVVGNVLIILAIGSDSHLHTPMYFFLANLSFTD
LFFVTNTIPKMLVSLQSQNKAISYPGCLTQLFFLVSLVALDNLILAVMAYDRYVAICHPLHYTTAMSPKL
CILLLILCWALSILYGLIHTLLMTRVTFCGSRKIHYIFCEMYVLLRLACSNTHINHMMLIATGCFVFLVP
FGFMIMSYICIVRAILKIPSASNKYKAFSTCASHLAVVALFYGTLCMVYLKPLHTYSMKDSVATVMYAVV
TPMMNPFIYSLRNKDMHGALGRLLRKPLQKLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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