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Report for CCDS24742.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24742.1 Public Mus musculus 11 Or2w3b 23 108 98 CCDS HistoryNCBI Gene:257931Re-query CCDS DB by CCDS ID:24742.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 24742.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075607.4 ENSMUSP00000075034.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075607.4Link to Ensembl Protein Viewer:ENSMUSP00000075034.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000075607Re-query CCDS DB by Protein ID:ENSMUSP00000075034
Original member Current member EBI ENSMUST00000216196.1 ENSMUSP00000150027.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216196.1Link to Ensembl Protein Viewer:ENSMUSP00000150027.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216196Re-query CCDS DB by Protein ID:ENSMUSP00000150027
Original member Current member EBI ENSMUST00000215513.1 ENSMUSP00000150575.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215513.1Link to Ensembl Protein Viewer:ENSMUSP00000150575.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215513Re-query CCDS DB by Protein ID:ENSMUSP00000150575
Original member Current member NCBI NM_001011769.2 NP_001011769.2 Accepted alive Link to Nucleotide Sequence:NM_001011769.2Link to Protein Sequence:NP_001011769.2Re-query CCDS DB by Nucleotide ID:NM_001011769Re-query CCDS DB by Protein ID:NP_001011769Link to BLAST:NP_001011769.2

Chromosomal Locations for CCDS 24742.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 58732180 58733163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (984 nt):
ATGGGAGCAACCAACGACAGCACCTTCAGCCATTTCATCCTTACTGGCTTCTCTGACCGGCCTGAGCTGG
AGAGGGTCCTCTTCGCCATCCTCCTGCCCGCCTACCTCCTGACCCTGCTGGGCAACAGCACCATCATCCT
GGTGTCCAGGCTGGACCCGCACCTTCACACCCCCATGTACTTCTTCCTCACACACCTGTCCTTCCTGGAC
CTCAGCTTCACCAGTAGCTCCATCCCACAGCTGCTCTATAACCTCAGCGGGCCGGACAAGACCATCAGCT
ATGTGGGCTGTGCTCTGCAGCTGGTCCTGTTCCTGGGCCTGGGGGGTGTGGAGTGCCTGCTGCTGGCTGT
CATGGCCTATGACCGATTTGTGGCGATCTGCAAACCTCTGCACTACATGGTCATCATGAGCCCCAGGCTC
TGCGTGGGCCTGGTCTCAGTGGCCTGGAGCTGCGGTGTGGCCAACTCCTTGGCTATGTCTCCAGCAACTC
TCAGCCTACCCCGCTGTGGGCACCACAGGGTGGATCACTTCCTCTGCGAGATGCCAGCTCTCATCAGGAT
GGCCTGTGTCAACACAGCTGTCGTTGAAGGCATTGCCTTCATCCTGGCAATAGGCATCGTGCTGTCGCCC
CTGGTGTTCATCTTGGTCTCCTATGGTTACATTGTAAGAGCGGTGTTGCGAATCAGCTCAGCTGCAGGAC
GGCAGAAAGCATTTAATACGTGTGGCTCGCACCTCACCGTGGTCTCGCTTTTCTACGGAAATATCATCTA
CATGTACATGCAGCCGGGGAACAGCTCCTCCCAGGACCAGGGCAAGTTCCTCACCCTCTTCTACAACATT
GTCACCCCTCTCCTCAACCCTCTGATCTACACGCTCAGGAACAAGGAGGTGAAGGGGGCGCTCAGAAGGC
TGCTCCTGGGTAGCCGAGAGACAGGGAAAGTAAGGGCTAGTTCTAGATGGACCAGAGGGAAGCTGTCCTG
GTGA

Translation (327 aa):
MGATNDSTFSHFILTGFSDRPELERVLFAILLPAYLLTLLGNSTIILVSRLDPHLHTPMYFFLTHLSFLD
LSFTSSSIPQLLYNLSGPDKTISYVGCALQLVLFLGLGGVECLLLAVMAYDRFVAICKPLHYMVIMSPRL
CVGLVSVAWSCGVANSLAMSPATLSLPRCGHHRVDHFLCEMPALIRMACVNTAVVEGIAFILAIGIVLSP
LVFILVSYGYIVRAVLRISSAAGRQKAFNTCGSHLTVVSLFYGNIIYMYMQPGNSSSQDQGKFLTLFYNI
VTPLLNPLIYTLRNKEVKGALRRLLLGSRETGKVRASSRWTRGKLSW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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