NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS11790.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11790.1 Public Homo sapiens 17 NPB 24 110 108 CCDS HistoryNCBI Gene:256933Re-query CCDS DB by CCDS ID:11790.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11790.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000333383.8 ENSP00000332766.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000333383.8Link to Ensembl Protein Viewer:ENSP00000332766.7Re-query CCDS DB by Nucleotide ID:ENST00000333383Re-query CCDS DB by Protein ID:ENSP00000332766
Original member Current member NCBI NM_148896.5 NP_683694.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_148896.5Link to Protein Sequence:NP_683694.1Re-query CCDS DB by Nucleotide ID:NM_148896Re-query CCDS DB by Protein ID:NP_683694Link to BLAST:NP_683694.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_683694.1 125 Q8NG41 125 100% 0 0

Chromosomal Locations for CCDS 11790.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 81902278 81902526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81902620 81902748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (378 nt):
ATGGCCCGGTCCGCGACACTGGCGGCCGCCGCCCTGGCGCTGTGCCTGCTGCTGGCGCCGCCTGGCCTCG
CGTGGTACAAGCCAGCGGCGGGGCACAGCTCCTACTCGGTGGGCCGCGCCGCGGGGCTGCTGTCCGGCCT
CCGCAGGTCCCCGTACGCGCGGCGCTCCCAGCCCTACAGAGGGGCGGAACCCCCGGGCGGGGCCGGCGCC
TCCCCGGAGCTGCAACTGCACCCCAGGCTGCGGAGCCTCGCTGTGTGCGTCCAGGACGTCGCCCCAAACC
TGCAGAGGTGCGAGCGGCTCCCCGACGGCCGCGGGACCTACCAGTGCAAGGCGAACGTCTTCCTGTCCCT
GCGCGCAGCCGACTGCCTCGCCGCCTGA

Translation (125 aa):
MARSATLAAAALALCLLLAPPGLAWYKPAAGHSSYSVGRAAGLLSGLRRSPYARRSQPYRGAEPPGGAGA
SPELQLHPRLRSLAVCVQDVAPNLQRCERLPDGRGTYQCKANVFLSLRAADCLAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH