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Report for CCDS5039.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5039.1 Public Homo sapiens 6 MMS22L 24 110 108 CCDS HistoryNCBI Gene:253714Re-query CCDS DB by CCDS ID:5039.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5039.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000275053.8 ENSP00000275053.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000275053.8Link to Ensembl Protein Viewer:ENSP00000275053.4Re-query CCDS DB by Nucleotide ID:ENST00000275053Re-query CCDS DB by Protein ID:ENSP00000275053
Original member Current member EBI ENST00000683635.1 ENSP00000508046.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000683635.1Link to Ensembl Protein Viewer:ENSP00000508046.1Re-query CCDS DB by Nucleotide ID:ENST00000683635Re-query CCDS DB by Protein ID:ENSP00000508046
Original member Current member NCBI NM_001350599.2 NP_001337528.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001350599.2Link to Protein Sequence:NP_001337528.1Re-query CCDS DB by Nucleotide ID:NM_001350599Re-query CCDS DB by Protein ID:NP_001337528Link to BLAST:NP_001337528.1
Original member Current member NCBI NM_198468.4 NP_940870.2 Accepted alive Link to Nucleotide Sequence:NM_198468.4Link to Protein Sequence:NP_940870.2Re-query CCDS DB by Nucleotide ID:NM_198468Re-query CCDS DB by Protein ID:NP_940870Link to BLAST:NP_940870.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001337528.1 1243 Q6ZRQ5 1243 100% 0 0
NP_940870.2 1243 Q6ZRQ5 1243 100% 0 0

Chromosomal Locations for CCDS 5039.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 97146806 97146887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97149853 97150020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97151771 97151867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97162002 97162165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97165246 97165457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97168071 97168240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97173063 97173222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97178443 97178585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97179408 97179559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97181904 97182054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97186497 97186690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97228894 97229403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97231426 97231652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97233861 97233980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97246628 97246690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97254557 97254733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97263335 97263448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97267872 97268002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97269902 97269992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97272704 97272881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97272975 97273062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97278849 97278898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97281237 97281362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97282314 97282477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3732 nt):
ATGGAGAACTGTTCTGCTGCATCGACGTTCCTGACTGACAGCTTAGAGCTGGAGCTGGGGACGGAATGGT
GCAAACCTCCTTACTTTTCTTGTGCTGTTGACAACAGAGGAGGAGGAAAACATTTTTCTGGAGAATCCTA
CCTCTGCAGCGGAGCCCTTAAGCGATTGATTTTGAATCTTGACCCTTTACCAACTAATTTTGAAGAAGAT
ACCTTGGAAATATTTGGCATTCAGTGGGTTACTGAAACAGCATTAGTGAATTCATCTAGAGAACTCTTTC
ATTTATTCAGGCAACAACTGTACAACTTGGAAACCTTGTTACAGTCCAGTTGTGATTTTGGGAAGGTATC
AACTCTACACTGCAAAGCAGACAATATTAGGCAGCAGTGTGTACTATTTCTCCATTATGTTAAAGTTTTC
ATCTTCAGGTATCTGAAAGTACAGAATGCTGAGAGTCATGTTCCTGTCCATCCTTATGAGGCTTTGGAGG
CTCAGCTTCCCTCAGTGTTGATTGATGAGCTTCATGGATTACTCTTGTATATTGGACACCTATCTGAACT
TCCCAGTGTTAATATAGGAGCATTTGTAAATCAAAACCAGATTAAGCTTTTTCCACCGTCATGGCATTTA
TTACATCTCCACTTGGATATACATTGGCTGGTGCTAGAAATTCTTTACATGCTGGGTGAAAAATTGAAAC
AAGTTGTATATGGTCATCAGTTTATGAATCTGGCAAGTGACAATTTAACCAACATCAGCCTATTTGAAGA
ACATTGTGAAACTCTCCTTTGTGATTTAATAAGCCTGTCACTCAACAGGTACGACAAGGTTAGGTCTTCT
GAATCATTAATGAGTGACCAGTGTCCATGTTTATGCATTAAAGAATTATGGGTTCTACTTATTCATCTTC
TAGACCACAGAAGTAAATGGTTTGTCTCGGAATCATTTTGGAACTGGTTGAATAAACTACTTAAAACACT
GCTTGAAAAATCAAGTGACCGAAGAAGATCCTCTATGCCTGTAATCCAGTCCAGGGATCCATTAGGTTTT
AGTTGGTGGATTATTACTCATGTAGCATCATTTTACAAGTTTGATCGCCATGGAGTACCAGATGAAATGA
GAAAAGTGGAATCAAATTGGAACTTTGTAGAAGAACTGCTGAAAAAGTCCATCAGTGTTCAGGGTGTCAT
TCTAGAAGAACAATTACGAATGTATCTTCACTGTTGTTTGACACTTTGTGATTTCTGGGAGCCAAACATT
GCAATTGTTACCATTTTATGGGAATATTATAGTAAGAACCTGAATAGTTCCTTCAGTATTTCTTGGCTTC
CTTTTAAAGGCCTTGCTAATACCATGAAGTCACCCTTGTCTATGCTTGAAATGGTGAAGACTTGCTGTTG
CGATAAACAAGATCAGGAACTATATAAATCCAGCAGTAGTTATACTATTTTTCTTTGTATTCTGGCAAAA
GTTGTTAAAAAAGCAATGAAGAGCAATGGCCCTCATCCTTGGAAACAAGTCAAAGGAAGAATATATTCAA
AATTCCATCAAAAAAGAATGGAAGAACTAACTGAAGTTGGTCTACAGAACTTTTTTAGCCTTTTTCTACT
GTTAGCAGCTGTTGCAGAGGTAGAAGATGTTGCAAGTCATGTTTTAGACCTCCTGAATTTCCTCAAGCCT
GCTTTTGTAACGTCTCAGAGAGCCCTCATTTGGAAGGGTCACATGGCCTTCCTCTTGATGTATGCCCAGA
AAAATCTGGACATTGGTGTTTTGGCTGAGAAATTTTCATGTGCTTTCCGGGAGAAAGCAAAGGAATTCTT
GGTGTCTAAGAATGAGGAAATGGTACAGAGACAGACTATCTGGACCCTTCTTTCCATATACATTGATGGT
GTTCAAGAAGTGTTTGAGACCAGCTATTGCTTGTATCCTTCCCATGAAAAACTGCTTAATGATGGATTTA
GTATGCTTCTGCGAGCATGTCGAGAATCTGAACTTAGGACAGTATTGAGCTTCCTACAAGCTGTTCTGGC
CAGAATCAGGAGTATGCATCAACAATTGTGTCAGGAACTTCAAAGGGACAATGTGGACCTATTTGTACAG
TCTTCATTATCGGCTAAAGAGCGCCACCTTGCTGCAGTTGCCAGTGCACTGTGGAGACATTTCTTTTCAT
TTTTGAAGAGTCAGAGAATGTCACAGGTAGTGCCTTTCTCACAACTTGCGGATGCAGCTGCAGACTTTAC
TTTGCTAGCAATGGACATGCCAAGCACAGCTCCATCAGATTTTCAGCCTCAGCCAGTTATATCAATTATT
CAACTTTTTGGTTGGGATGATATCATCTGCCCTCAAGTTGTAGCAAGATATTTAAGTCATGTCCTACAAA
ATAGCACATTATGTGAAGCACTTTCTCATTCAGGCTATGTATCTTTTCAAGCCTTAACCGTAAGATCATG
GATTCGTTGTGTTTTGCAAATGTATATTAAAAACCTCTCTGGGCCTGATGATTTGCTCATAGATAAAAAT
CTGGAAGAGGCAGTTGAAAAAGAGTACATGAAACAGTTGGTCAAACTGACAAGATTACTATTTAATCTCT
CAGAAGTAAAGAGTATTTTCTCAAAGGCCCAAGTTGAATATTTATCCATCTCAGAAGACCCTAAAAAAGC
ACTTGTTCGATTCTTTGAGGCTGTTGGTGTAACTTACGGGAACGTCCAGACACTTTCTGATAAATCTGCC
ATGGTCACAAAGTCCTTGGAATACCTTGGTGAAGTATTAAAATATATTAAGCCTTATTTGGGAAAAAAAG
TTTTCAGTGCAGGGCTGCAGCTGACTTATGGAATGATGGGAATTCTTGTGAAATCATGGGCACAAATCTT
TGCCACTTCTAAAGCCCAAAAATTACTATTCCGGATCATAGATTGTTTACTGCTGCCACATGCAGTATTA
CAGCAAGAGAAGGAACTGCCTGCACCTATGTTGTCAGCAATTCAGAAAAGTCTTCCTTTGTATCTCCAGG
GCATGTGTATCGTGTGTTGTCAATCTCAAAATCCGAATGCCTATTTGAATCAATTGCTAGGGAATGTTAT
TGAGCAGTATATTGGGCGATTTCTTCCAGCTTCACCATATGTTTCAGATCTTGGACAACATCCTGTTTTG
CTGGCATTGAGAAACACAGCCACTATTCCACCAATATCATCTCTAAAGAAATGCATTGTGCAAGTCATAA
GGAAATCCTACCTTGAGTATAAGGGGTCCTCACCTCCTCCTCGCTTAGCATCCATTCTGGCCTTCATCCT
CCAACTCTTCAAGGAAACTAACACAGACATTTATGAAGTTGAACTACTCCTCCCTGGCATTTTAAAATGC
TTGGTGTTAGTCAGTGAACCACAAGTTAAAAGGCTGGCCACAGAGAACCTGCAATACATGGTAAAAGCCT
GCCAAGTGGGGTCAGAAGAAGAACCTTCCTCCCAGCTGACTTCTGTGTTTAGGCAGTTTATCCAGGATTA
TGGTATGAGGTACTATTACCAGGTTTACAGCATTTTAGAAACAGTAGCAACATTGGACCAGCAGGTTGTC
ATCCACTTGATTTCTACCCTTACTCAGTCTCTGAAGGATTCAGAGCAGAAATGGGGCCTTGGCAGGAATA
TAGCACAAAGGGAAGCCTATAGCAAACTTTTGTCTCACCTTGGACAGATGGGACAAGATGAGATGCAGAG
ACTGGAAAATGATAATACTTAA

Translation (1243 aa):
MENCSAASTFLTDSLELELGTEWCKPPYFSCAVDNRGGGKHFSGESYLCSGALKRLILNLDPLPTNFEED
TLEIFGIQWVTETALVNSSRELFHLFRQQLYNLETLLQSSCDFGKVSTLHCKADNIRQQCVLFLHYVKVF
IFRYLKVQNAESHVPVHPYEALEAQLPSVLIDELHGLLLYIGHLSELPSVNIGAFVNQNQIKLFPPSWHL
LHLHLDIHWLVLEILYMLGEKLKQVVYGHQFMNLASDNLTNISLFEEHCETLLCDLISLSLNRYDKVRSS
ESLMSDQCPCLCIKELWVLLIHLLDHRSKWFVSESFWNWLNKLLKTLLEKSSDRRRSSMPVIQSRDPLGF
SWWIITHVASFYKFDRHGVPDEMRKVESNWNFVEELLKKSISVQGVILEEQLRMYLHCCLTLCDFWEPNI
AIVTILWEYYSKNLNSSFSISWLPFKGLANTMKSPLSMLEMVKTCCCDKQDQELYKSSSSYTIFLCILAK
VVKKAMKSNGPHPWKQVKGRIYSKFHQKRMEELTEVGLQNFFSLFLLLAAVAEVEDVASHVLDLLNFLKP
AFVTSQRALIWKGHMAFLLMYAQKNLDIGVLAEKFSCAFREKAKEFLVSKNEEMVQRQTIWTLLSIYIDG
VQEVFETSYCLYPSHEKLLNDGFSMLLRACRESELRTVLSFLQAVLARIRSMHQQLCQELQRDNVDLFVQ
SSLSAKERHLAAVASALWRHFFSFLKSQRMSQVVPFSQLADAAADFTLLAMDMPSTAPSDFQPQPVISII
QLFGWDDIICPQVVARYLSHVLQNSTLCEALSHSGYVSFQALTVRSWIRCVLQMYIKNLSGPDDLLIDKN
LEEAVEKEYMKQLVKLTRLLFNLSEVKSIFSKAQVEYLSISEDPKKALVRFFEAVGVTYGNVQTLSDKSA
MVTKSLEYLGEVLKYIKPYLGKKVFSAGLQLTYGMMGILVKSWAQIFATSKAQKLLFRIIDCLLLPHAVL
QQEKELPAPMLSAIQKSLPLYLQGMCIVCCQSQNPNAYLNQLLGNVIEQYIGRFLPASPYVSDLGQHPVL
LALRNTATIPPISSLKKCIVQVIRKSYLEYKGSSPPPRLASILAFILQLFKETNTDIYEVELLLPGILKC
LVLVSEPQVKRLATENLQYMVKACQVGSEEEPSSQLTSVFRQFIQDYGMRYYYQVYSILETVATLDQQVV
IHLISTLTQSLKDSEQKWGLGRNIAQREAYSKLLSHLGQMGQDEMQRLENDNT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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