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Report for CCDS13180.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13180.1 Public Homo sapiens 20 DEFB123 24 110 108 CCDS HistoryNCBI Gene:245936Re-query CCDS DB by CCDS ID:13180.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13180.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376309.4 ENSP00000365486.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000376309.4Link to Ensembl Protein Viewer:ENSP00000365486.3Re-query CCDS DB by Nucleotide ID:ENST00000376309Re-query CCDS DB by Protein ID:ENSP00000365486
Original member Current member NCBI NM_153324.4 NP_697019.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153324.4Link to Protein Sequence:NP_697019.1Re-query CCDS DB by Nucleotide ID:NM_153324Re-query CCDS DB by Protein ID:NP_697019Link to BLAST:NP_697019.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_697019.1 67 Q8N688-1 67 100% 0 0

Chromosomal Locations for CCDS 13180.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 31440699 31440756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 31450029 31450174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (204 nt):
ATGAAGCTCCTTTTGCTGACTTTGACTGTGCTGCTGCTCTTATCCCAGCTGACTCCAGGTGGCACCCAAA
GATGCTGGAATCTTTATGGCAAATGCCGTTACAGATGCTCCAAGAAGGAAAGAGTCTATGTTTACTGCAT
AAATAATAAAATGTGCTGCGTGAAGCCCAAGTACCAGCCAAAAGAAAGGTGGTGGCCATTTTAA

Translation (67 aa):
MKLLLLTLTVLLLLSQLTPGGTQRCWNLYGKCRYRCSKKERVYVYCINNKMCCVKPKYQPKERWWPF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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