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Report for CCDS19134.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19134.1 Public Mus musculus 5 Cct8l1 23 108 98 CCDS HistoryNCBI Gene:242891Re-query CCDS DB by CCDS ID:19134.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19134.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045016.8 ENSMUSP00000044932.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045016.8Link to Ensembl Protein Viewer:ENSMUSP00000044932.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000045016Re-query CCDS DB by Protein ID:ENSMUSP00000044932
Original member Current member NCBI NM_198621.2 NP_941023.1 Accepted alive Link to Nucleotide Sequence:NM_198621.2Link to Protein Sequence:NP_941023.1Re-query CCDS DB by Nucleotide ID:NM_198621Re-query CCDS DB by Protein ID:NP_941023Link to BLAST:NP_941023.1

Chromosomal Locations for CCDS 19134.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 25516289 25517977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1689 nt):
ATGGCGGTCTCCCCACCCTCCCGGGCCACACAAACCAAAGTTCAATCAGACCTAGAACTTCCCCAGCGGC
TGAAGCCAGGCCTAGAGAAAACCCCTGAATCTCAAGGAGAAGAGCCATCATACATACTGAGGGCCACAGC
TGCAGCTCAGACCCTAGCCAGTATCATCCGGTCTTGTTATGGTCCCTTTGGCCGGCAGAAGTTTCTGGTG
ACTGCCAAGGGAGAAACAGTTTGTACAGGTCATGCCGCTGCCATCCTCAAGGCTCTGGACCTGGAGCACC
CAGCTGCCCAGTTTGTTCAAGAATTAGCCCAAACCCAGGTAGAGAACGCTGGGGATGGCACGGTCTTTGT
TGTTCTACTGACAGAAGCCTTGCTGGAGCAGGCCCATTACCTTCTGTGGGCTGGCCTAACTCCAACCCAG
CTCCGGGAGGCCTTTGCCACAGCCACAGCAGAAGTTCTGACCGCTCTGCCTTCCCTGGCCATCCGCTCTC
TAGGGCCTTTGGAAGATCCTTCCTGGGCCCTCTATTCTGTGATAAGTACTCACACCCTGTCCAACTCAGA
TTATTTAACCAAGCTTGTAGCTCAAGCGTGCTGGGTTAGCAGGGAGCCAAATGGCAGCTTCAAGCCTGAG
AGTATTGTCGTGTGCGTACTTCAGGGTGGGAAACTGACTGATTCCCGAATTTTTCCTGGAGTAGCAATAG
CGGGGAAGCTGTGTGGACAAAAGACTGAGGTCCTTGGTGATGCTAGGGTGGCCCTGTTCAATTGCCCCTT
TGGTCCTACAAATCCATTTACACTGGCCACACCACGTCTCTCCAACCCGGAAGAACTACTAAGATTTCGG
AAACAAACTGAACAAGTGGAAAAGGAAATAGCCCAACTAGCCATTATGGACATTAACGTGGCAGTGGTCT
TGGGGGAAGTTAATGAGAAATCGGTGGACCAGGCTAACTACTGTGGCATCATGGTGATTCAAGCCAAGTC
CCGAAAGGAGATTGTCTACCTGAGTGAGAAGCTGGGCACTCCTCTGCTCGGCCGGGTCCTTCCTCCCCTG
GAGCCAGGGAAGTGCCACAAGGTTTACAGGAAGGAATTTGGAGATACTGCGGTGGTAATGTTTGAATGGG
AACATGAGATTGCACCTTTTCTCTCAGTGGTCCTTAGGGGACCCACCATCCAGGGACTTCGGGTTGCAGA
GCAGGCTGTCTACTATGGCATTGATGCATTTTCTCAGCTGTGTCAAGATCCCAGACTACTGCCAGGAGCA
GGTGCCACAGAGATGGCTCTGGCAAAAATGCTGGTAGACAAAGGAAGCCGACTGTCTGGCCCCAACGGTC
TGGCCTTCCAAGCATTTGCTCAAGCCCTGAGTTCTCTGCCTAAAACCCTGGCAGAGAATGCAGGCTTAGC
TGCCCAAAGCGTGATGGCAGAATTGAGTGGATTTCACCAAGCTGGGAACTTCTTCGTTGGAGTGGGAACA
GACGGCTTAGTAAATGTGACTCATGAAGGTATATGGGACATACTGAGGACCAAAGCCCAAGGGTTACAAG
CAGTTGCTGAGCTGGTGCAGCAGCTGGTGACTGTGGACCAAATTATAGTGGCCAGAAAGACTCCTTTGTA
CAGACAGATCACAGACCCCACCTTGAATGCAAAGGTATCCTCACCCCTGAGAGCAAAATTCTTTGGAAAA
TATGTATAG

Translation (562 aa):
MAVSPPSRATQTKVQSDLELPQRLKPGLEKTPESQGEEPSYILRATAAAQTLASIIRSCYGPFGRQKFLV
TAKGETVCTGHAAAILKALDLEHPAAQFVQELAQTQVENAGDGTVFVVLLTEALLEQAHYLLWAGLTPTQ
LREAFATATAEVLTALPSLAIRSLGPLEDPSWALYSVISTHTLSNSDYLTKLVAQACWVSREPNGSFKPE
SIVVCVLQGGKLTDSRIFPGVAIAGKLCGQKTEVLGDARVALFNCPFGPTNPFTLATPRLSNPEELLRFR
KQTEQVEKEIAQLAIMDINVAVVLGEVNEKSVDQANYCGIMVIQAKSRKEIVYLSEKLGTPLLGRVLPPL
EPGKCHKVYRKEFGDTAVVMFEWEHEIAPFLSVVLRGPTIQGLRVAEQAVYYGIDAFSQLCQDPRLLPGA
GATEMALAKMLVDKGSRLSGPNGLAFQAFAQALSSLPKTLAENAGLAAQSVMAELSGFHQAGNFFVGVGT
DGLVNVTHEGIWDILRTKAQGLQAVAELVQQLVTVDQIIVARKTPLYRQITDPTLNAKVSSPLRAKFFGK
YV


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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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