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Report for CCDS17545.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17545.1 Public Mus musculus 3 Pglyrp3 23 108 98 CCDS HistoryNCBI Gene:242100Re-query CCDS DB by CCDS ID:17545.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17545.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047660.4 ENSMUSP00000035737.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047660.4Link to Ensembl Protein Viewer:ENSMUSP00000035737.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000047660Re-query CCDS DB by Protein ID:ENSMUSP00000035737
Original member Current member NCBI NM_207247.4 NP_997130.2 Accepted alive Link to Nucleotide Sequence:NM_207247.4Link to Protein Sequence:NP_997130.2Re-query CCDS DB by Nucleotide ID:NM_207247Re-query CCDS DB by Protein ID:NP_997130Link to BLAST:NP_997130.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997130.2 347 A1A547 347 100% 0 0

Chromosomal Locations for CCDS 17545.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 92014627 92014702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 92022605 92022806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 92025680 92025798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 92026447 92026596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 92027992 92028190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 92030632 92030750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 92031385 92031563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1044 nt):
ATGTTGGTGTCCTGGGACCACCCTAAGATGTTGCCCAGGCTTCTTGGCTTCTTGGCTCTCAGTCTCCTGG
CCTGTGGCAACCCAACCATAGTTTCCAGAAAAGAGTGGGGAGCAAGTTCACTTACCTGCAGAGTACCACT
GAGCCTGCCCGTACCCTACCTCATCATAGAGCAAGTTACCAGGATGCAATGCCAAGATCAGATCACCTGC
AGCCAGGTGGTGCGGGTCCTACAGTCCCAATATGTCCACAACAAAGGCTGGTGTGACATTGCCTTCAACT
TTCTGGTTGGAGATGATGGCAAGGTGTATGAAGGTGTCGGCTGGTATGTCCAAGGCTTGCACACTCAAGG
CTACAATAACGTTTCCCTGGGCATTGCCTTCTTTGGCAGTAAGATAGGAAGCCCCAGTCCCGCTGCTTTA
TCAGCTACAGAGGATCTGATCTTCTTTGCCATCCAGAATGGCTACCTGTCACCCAAGTACATTCAGCCAT
TTCTCTTAAAAGAAGAGACCTGTTTGGTTCCTCAACACTCAGAGATACCCAAAAAAGCATGCCCCAATAT
CACACCACGGTCTGCTTGGGAAGCCAGAGAAACACACTGCCCTCAGATGAACCTTCCAGCCAAATTTGTC
ATCATCATCCACACTGCTGGGAAAAGCTGCAATGAGTCTGCAGACTGTTTGGTTCGTGTAAGAGACACAC
AGTCCTTTCACATAGATAACCAAGATTTCTGCGACATTGCATATCACTTTCTAGTGGGCCAGGATGGTGA
AGTATATGAAGGAGTTGGCTGGAATATTGAAGGCTCTCATACCTATGGATACAACGATATTGCTCTAGGA
ATTGCCTTCATGGGAAACTTTGTAGAAAAGCCTCCAAATGAAGCTTCACTGAAGGCAGCCCAGAGCCTGA
TCCAGTGTGCTGTGGCCAAAGGGTACCTGACCTCCAACTACCTGCTAATGGGCCACAGTGATGTGTCCAA
CATCCTGTCCCCTGGACAGGCATTGTACAACATCATCAAGACATGGCCTCACTTCAAGCACTGA

Translation (347 aa):
MLVSWDHPKMLPRLLGFLALSLLACGNPTIVSRKEWGASSLTCRVPLSLPVPYLIIEQVTRMQCQDQITC
SQVVRVLQSQYVHNKGWCDIAFNFLVGDDGKVYEGVGWYVQGLHTQGYNNVSLGIAFFGSKIGSPSPAAL
SATEDLIFFAIQNGYLSPKYIQPFLLKEETCLVPQHSEIPKKACPNITPRSAWEARETHCPQMNLPAKFV
IIIHTAGKSCNESADCLVRVRDTQSFHIDNQDFCDIAYHFLVGQDGEVYEGVGWNIEGSHTYGYNDIALG
IAFMGNFVEKPPNEASLKAAQSLIQCAVAKGYLTSNYLLMGHSDVSNILSPGQALYNIIKTWPHFKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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