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Report for CCDS16907.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16907.2 Public Mus musculus 2 Tspyl3 23 108 98 CCDS HistoryNCBI Gene:241732Re-query CCDS DB by CCDS ID:16907.2See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 16907.2
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 16907.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099194.3 ENSMUSP00000096799.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099194.3Link to Ensembl Protein Viewer:ENSMUSP00000096799.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099194Re-query CCDS DB by Protein ID:ENSMUSP00000096799
Original member Current member NCBI NM_198617.2 NP_941019.2 Accepted alive Link to Nucleotide Sequence:NM_198617.2Link to Protein Sequence:NP_941019.2Re-query CCDS DB by Nucleotide ID:NM_198617Re-query CCDS DB by Protein ID:NP_941019Link to BLAST:NP_941019.2

Chromosomal Locations for CCDS 16907.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 153224312 153225316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1005 nt):
ATGGCGTGGGAGGGGATCGGGGTTCTGGAGGCGACCATGTGCCTGCCGCCCATACAAGAGCGGGATGCAC
ACCCGGCCCGGCCCCGTGTCCCCGGAGCTGAGCCGCTTAGGCCCTGCAACCCCGCAGCCAGCCCTGCAAC
CGCACCGCCTTCCTCAGAAAACACTGGAGAGAACTCTGCCTCCCGCGTTCTGAACCTGGATGGCTGCGAG
AAGGGCTCGGGTAATGGGGTGGGGACCAAAGGAAAGACTGAGGAAGTGACGACTGAGGAAGACTCTGTAG
CCGCGGAGGAGCCTGCGGAGGTGGGGGAGAAGCTGGAGTGGGTCGCGGAAGCCCAGGAGAGCCTGAGGCC
TCTGGACCTCAGGGCTCTTATCGTGGACCCTCTAGAGGCCATCCAGTGGGAGTTAGAGGCCATGAGTGCC
CAGGCGGATGGGGCCCACCTGCAGCTGGTGCGCAGGTTTGGGAGGATGCGTCGGTTGCACCTAGCCCGTA
GGAGCTTCATCATTCAAAATATTCCAGGCTTTTGGGTCACTGCCTTCCTGAACCACCCACAGCTATCAGC
TATGATCAGCCCTAGGGATGAAGACATGCTTGGCTACCTGATGAATTTGGAGGTGAGGGAGCTCAGGCAC
TCCAGAACAGGTTGCAAGTTCAAGTTCCTGTTTGAGAGCAACCCTTACTTCCGAAATGAGGTGATAGTGA
AGGAGTATGAGTGCAGAGCCTCAGGCGGTGTGGTGTCCATTGCTACTCGCATCCTCTGGCACCGAGGCCA
GGAACCTCCTGCCTTGGTGCACAGGAACCGGGATGCCGTGCGAAGCTTCTTCAGCTGGTTTTCACAGCAT
AGCCTCCTAGAAGCTGACAGGGTGGCCCAGATCATTAAAGATGACCTGTGGCCCAACCCTTTGCAATACT
ACTTGCTGGGGCAAAGGCCCTACAGAGCTAGACGAAGCCTTGCAAGGTGGTCAGCAGAGGCTCGGCCAAG
GCCCTATGGGTTCCAGTCTGGCTAA

Translation (334 aa):
MAWEGIGVLEATMCLPPIQERDAHPARPRVPGAEPLRPCNPAASPATAPPSSENTGENSASRVLNLDGCE
KGSGNGVGTKGKTEEVTTEEDSVAAEEPAEVGEKLEWVAEAQESLRPLDLRALIVDPLEAIQWELEAMSA
QADGAHLQLVRRFGRMRRLHLARRSFIIQNIPGFWVTAFLNHPQLSAMISPRDEDMLGYLMNLEVRELRH
SRTGCKFKFLFESNPYFRNEVIVKEYECRASGGVVSIATRILWHRGQEPPALVHRNRDAVRSFFSWFSQH
SLLEADRVAQIIKDDLWPNPLQYYLLGQRPYRARRSLARWSAEARPRPYGFQSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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