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Report for CCDS29767.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29767.1 Public Mus musculus 19 Slc16a12 23 108 98 CCDS HistoryNCBI Gene:240638Re-query CCDS DB by CCDS ID:29767.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29767.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000009522.3 ENSMUSP00000009522.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000009522.3Link to Ensembl Protein Viewer:ENSMUSP00000009522.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000009522Re-query CCDS DB by Protein ID:ENSMUSP00000009522
Original member Current member NCBI NM_172838.4 NP_766426.1 Accepted alive Link to Nucleotide Sequence:NM_172838.4Link to Protein Sequence:NP_766426.1Re-query CCDS DB by Nucleotide ID:NM_172838Re-query CCDS DB by Protein ID:NP_766426Link to BLAST:NP_766426.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766426.1 486 Q8BGC3 486 100% 0 0

Chromosomal Locations for CCDS 29767.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 34670631 34670893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34672436 34672695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34674807 34675386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34677284 34677427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34680288 34680391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34690644 34690753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1461 nt):
ATGACGAAGATAACTAGAGTCAGCTTGGCATCCCCTCCAGATGGAGGCTGGGGCTGGATGATAGTGGCCG
GCTGCTTCCTTGTTACCATCTGCACCCGGGCAGTCACCAGATGTATCTCCATATTTTTTGTGGAGTTTCA
GACATACTTTGCTCAGGATTACTCCCAAACAGCATGGATCCATTCCATTGTAGACTGTATGACAATGCTC
TGTGCTCCGCTTGGGAGTGTTGTCAGTAACCAGTTATCCTGTCAAGCGGGGATCATGCTGGGTGGCTTGC
TGGCATCTACTGGTTTCATCCTGGGCTCATTTGCCACCAGCTTGAAGCACCTCTACCTCAGCCTGGGAGT
TCTTACAGGTCTTGGATTTGCACTTTGTTACTCTCCGGCAATTGCCATGGTGGGCAAGTATTTCAGCAGA
CGGAAAGCCCTGGCTTATGGGATTGCCATGTCAGGCAGTGGCATTGGTACCTTCATCCTGGCTCCTGTCG
TTCAGCTCCTCATCGAACAGTTTTCCTGGCGAGGAGCACTGCTCATTCTTGGCGGGTTCGTTCTGAATCT
CTGCGTCTGCGGCGCTCTGATGCGTCCAATTACCCTTAAAGAGGACCGATCAGTCCCAGAAAAGAATCAC
AACCGTGAATCTCAGCGAGAAGACTGTAAGCAAGCATCTCCCTATTCACCTTTGACCAAAGAATGTACAG
AGACCCGTCTTTGCTGCTCCTTGCAGCAGGAATACGGTTTTTTACTGATGTCAGACTTCGTCGTGTTGGC
CGTCTCTGTTCTGTTCATGGCCTACGGCTGCAGCCCTCTCTTTGTGTACCTAGTGCCTTATGCTTTGAGT
GTCGGAGTGAGCCACCATCAAGCTGCTTTCCTCATGTCCATCCTCGGGGTAATCGATATTGTTGGCAATA
TCACATTTGGCTGGCTAACTGACAGAAGGTGTCTGAAGAATTACCGATATGTTTGCTACCTCTTTGCCGT
GGCACTAGATGGGCTGTGCTATCTGTGTCTTCCAATGCTTCAAACCTTCCCCCTTCTTGTGCCTTTCTCT
TGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCGGTCGTGACTGCAGAGATAGTAGGGA
CCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACC
CATTGCAGGATGGCTGGTGGACACGACGGGCAGCTACACTGCAGCCTTCCTTCTCTGTGGATTTGCCATG
ATATTTAGTTCCATCCTGCTTGGCTTCGTTAGAATTGTCAAGAGGATGAAGAGAACACAAGTGCCTTTCC
CGGTCAAAGACTCAGATCCCAAGCTACAACTGTGGACCAATGGATCAGTGGCCTACTCTGTAGCAAGGGA
GTTAGATCAGAAAGATGAGGAACCCCTGCCTAAAGCCAGGTCTGGTTGCAACCTCACGTGA

Translation (486 aa):
MTKITRVSLASPPDGGWGWMIVAGCFLVTICTRAVTRCISIFFVEFQTYFAQDYSQTAWIHSIVDCMTML
CAPLGSVVSNQLSCQAGIMLGGLLASTGFILGSFATSLKHLYLSLGVLTGLGFALCYSPAIAMVGKYFSR
RKALAYGIAMSGSGIGTFILAPVVQLLIEQFSWRGALLILGGFVLNLCVCGALMRPITLKEDRSVPEKNH
NRESQREDCKQASPYSPLTKECTETRLCCSLQQEYGFLLMSDFVVLAVSVLFMAYGCSPLFVYLVPYALS
VGVSHHQAAFLMSILGVIDIVGNITFGWLTDRRCLKNYRYVCYLFAVALDGLCYLCLPMLQTFPLLVPFS
CTFGYFDGAYVTLIPVVTAEIVGTTSLSSALGVVYFLHAVPYLVSPPIAGWLVDTTGSYTAAFLLCGFAM
IFSSILLGFVRIVKRMKRTQVPFPVKDSDPKLQLWTNGSVAYSVARELDQKDEEPLPKARSGCNLT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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