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Report for CCDS37346.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37346.1 Public Mus musculus 16 Cd200r4 23 108 98 CCDS HistoryNCBI Gene:239849Re-query CCDS DB by CCDS ID:37346.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37346.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114626.3 ENSMUSP00000110273.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114626.3Link to Ensembl Protein Viewer:ENSMUSP00000110273.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000114626Re-query CCDS DB by Protein ID:ENSMUSP00000110273
Original member Current member EBI ENSMUST00000176819.7 ENSMUSP00000135299.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000176819.7Link to Ensembl Protein Viewer:ENSMUSP00000135299.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000176819Re-query CCDS DB by Protein ID:ENSMUSP00000135299
Original member NCBI NM_207244.2 NP_997127.1 Updated not alive Link to Nucleotide Sequence:NM_207244.2Link to Protein Sequence:NP_997127.1Re-query CCDS DB by Nucleotide ID:NM_207244Re-query CCDS DB by Protein ID:NP_997127
Current member NCBI NM_207244.3 NP_997127.1 Accepted alive Link to Nucleotide Sequence:NM_207244.3Link to Protein Sequence:NP_997127.1Re-query CCDS DB by Nucleotide ID:NM_207244Re-query CCDS DB by Protein ID:NP_997127Link to BLAST:NP_997127.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997127.1 270 Q6XJV4 270 100% 0 0

Chromosomal Locations for CCDS 37346.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 44820896 44820959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44832075 44832137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44832858 44833172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44833284 44833532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44837946 44838060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44838425 44838431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (813 nt):
ATGCATGCTCTGGGGAGGATTCCGACTTTGACTTTGCTGATCTTCATCAATATTTTTGTGTCTGGGTCAA
GTTGTACTGATGAGAATCAAACAATACAGAATGACAGTTCATCTTCTCTGACACAAGTTAACACTACAAT
GTCTGTACAGATGGATAAAAAGGCTCTGCTCTGCTGCTTTTCTAGTCCACTGATAAATGCAGTATTAATC
ACATGGATAATAAAACACAGACACCTGCCTTCCTGCACAATAGCATACAACCTAGATAAAAAGACCAATG
AAACCAGCTGCTTGGGCAGGAACATCACCTGGGCCTCCACACCTGACCACAGTCCTGAACTTCAGATCAG
TGCAGTGGCCCTCCAGCATGAGGGGACTTACACATGTGAGATAGTAACACCTGAAGGGAATTTAGAAAAA
GTCTATGACCTCCAAGTGCTGGTGCCCCCTGAGGTAACCTACTTTCCAGGGAAAAACAGAACTGCAGTCT
GTGAGGCAATGGCAGGCAAGCCTGCTGCACAGATCTCTTGGACTCCAGATGGGGACTGTGTCACTAAGAG
TGAGTCACACAGCAATGGCACTGTGACTGTCAGGAGCACGTGCCACTGGGAGCAGAACAATGTGTCTGTT
GTGTCCTGCTTAGTCTCTCATTCGACTGGTAATCAGTCTCTGTCCATAGAACTGAGTCAAGGTACAATGA
CCACCCCCCGTTCCTTGCTGACCATTCTCTATGTGAAAATGGCCCTTTTGGTGATTATTCTTCTTAACGT
AGGATTTGCTTTCTTCCAGAAGAGAAATTTTGCCAGAACATGA

Translation (270 aa):
MHALGRIPTLTLLIFINIFVSGSSCTDENQTIQNDSSSSLTQVNTTMSVQMDKKALLCCFSSPLINAVLI
TWIIKHRHLPSCTIAYNLDKKTNETSCLGRNITWASTPDHSPELQISAVALQHEGTYTCEIVTPEGNLEK
VYDLQVLVPPEVTYFPGKNRTAVCEAMAGKPAAQISWTPDGDCVTKSESHSNGTVTVRSTCHWEQNNVSV
VSCLVSHSTGNQSLSIELSQGTMTTPRSLLTILYVKMALLVIILLNVGFAFFQKRNFART


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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