NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27417.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27417.1 Public Mus musculus 15 Erich5 23 108 98 CCDS HistoryNCBI Gene:239368Re-query CCDS DB by CCDS ID:27417.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27417.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060894.8 ENSMUSP00000058182.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060894.8Link to Ensembl Protein Viewer:ENSMUSP00000058182.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000060894Re-query CCDS DB by Protein ID:ENSMUSP00000058182
Original member Current member NCBI NM_173421.2 NP_775597.1 Accepted alive Link to Nucleotide Sequence:NM_173421.2Link to Protein Sequence:NP_775597.1Re-query CCDS DB by Nucleotide ID:NM_173421Re-query CCDS DB by Protein ID:NP_775597Link to BLAST:NP_775597.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775597.1 362 Q8K0S2 362 100% 0 0

Chromosomal Locations for CCDS 27417.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 34453647 34453707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34470688 34471584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34472810 34472940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1089 nt):
ATGGGCTGCTCCAGCAGCGCCCTCAACAAAGCGGGCGACAGCAGCAGGTTCGGCAGCGGAGTAACTTCGA
ATGAGAATTCTTCCACTGTAGAACATAACAAGTTCTGTGTAGACCAACCTAAACCATGTACACCAGGAGG
AGAAGCTGCCTTTCATGGCAACACACAAAGGGAAAGCCATCCTTCACTCGAGAGGCCCAAGGCTTCAGTG
GTGCCTACAGCAAATGGTGTTAAATCCTACCATCAACCATCTCTGGCAAATGATGAGACCCCTGGAAAGG
AAGCCACAGATCACTCAAGACCCACAAAGAAGATTGAGCCTCTAGTGCAAGGCGGGGAGTGTGAGCAACC
TCAGCCAGGAGGCAAAGATGATATGTTGGGAACTGAGGAAGTGAAGAAAGATGTGGAAGCAAGGACAGAG
GTCCCGTCTTTAAAAGGAGATGCTGAGATTAAGCCTCTGAGGCTGTCATCAGAGAGGGACTCCCCTGGAG
CTCCACAGGCTGGGACGATGAAGTTTCTACAAACAGCCGAGAACATTCTGCCTCTGGAAACAACTCAGGA
GCTACCACCAAAAGAAGCAACGGGAAAGGGTGCACAGCCCCAGATTCTAGAAGCAATTCCCAAAGAGAAC
AGCTCTCCAGAAATAGAAGGGATCCAATCTGCAGAAAGCAGCGGACAGCAGCAACTTGTAGAAGCCCCAG
GTGAAGCTGAGCAGCCCCAAGCTCTAGAAACAGTACTCAAAGAGAACGAAACATCACAGATGCCAGGCAG
AAGCCAGCCCGTGCCAACACCTGTAATGAACAAGTCACCCTGTGAAGCTCCTGACGGTCTCAGAAATGCC
CATGAACCTCAAGTAACAGGTGGAAACAGGGTACAGCCAGCCGAAACTGGAGAGACAGCAGCAAAGGTGG
AAATGGCCAGAGAAATCCACCCTGATAAAGAGGAACAACACATTGAAGGTGAGACAGGAGAAAAGGTGGA
AGCAGAGATGAAAAATGAGAAAGAAAGTGAAGAAGCTGAAACTAAAGAGAAAGAAACAGGAGAAGCTGTG
GATCTTGGAGCAGCAGGGGCTGGTGACAGAAGGGCTTAG

Translation (362 aa):
MGCSSSALNKAGDSSRFGSGVTSNENSSTVEHNKFCVDQPKPCTPGGEAAFHGNTQRESHPSLERPKASV
VPTANGVKSYHQPSLANDETPGKEATDHSRPTKKIEPLVQGGECEQPQPGGKDDMLGTEEVKKDVEARTE
VPSLKGDAEIKPLRLSSERDSPGAPQAGTMKFLQTAENILPLETTQELPPKEATGKGAQPQILEAIPKEN
SSPEIEGIQSAESSGQQQLVEAPGEAEQPQALETVLKENETSQMPGRSQPVPTPVMNKSPCEAPDGLRNA
HEPQVTGGNRVQPAETGETAAKVEMAREIHPDKEEQHIEGETGEKVEAEMKNEKESEEAETKEKETGEAV
DLGAAGAGDRRA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH