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Report for CCDS49109.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49109.1 Public Mus musculus 12 Mideas 23 108 98 CCDS HistoryNCBI Gene:238317Re-query CCDS DB by CCDS ID:49109.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49109.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046266.12 ENSMUSP00000048120.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046266.12Link to Ensembl Protein Viewer:ENSMUSP00000048120.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000046266Re-query CCDS DB by Protein ID:ENSMUSP00000048120
Original member Current member EBI ENSMUST00000110294.1 ENSMUSP00000105923.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110294.1Link to Ensembl Protein Viewer:ENSMUSP00000105923.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110294Re-query CCDS DB by Protein ID:ENSMUSP00000105923
Original member Current member NCBI NM_001163501.1 NP_001156973.1 Accepted alive Link to Nucleotide Sequence:NM_001163501.1Link to Protein Sequence:NP_001156973.1Re-query CCDS DB by Nucleotide ID:NM_001163501Re-query CCDS DB by Protein ID:NP_001156973Link to BLAST:NP_001156973.1
Original member Current member NCBI NM_001163502.1 NP_001156974.1 Accepted alive Link to Nucleotide Sequence:NM_001163502.1Link to Protein Sequence:NP_001156974.1Re-query CCDS DB by Nucleotide ID:NM_001163502Re-query CCDS DB by Protein ID:NP_001156974Link to BLAST:NP_001156974.1

Chromosomal Locations for CCDS 49109.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 84152402 84152561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84152835 84153031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84154895 84155107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84156427 84156576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84158255 84158343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84158976 84159051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84159650 84159753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84159875 84160017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84160479 84160545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84162256 84162601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84171460 84171759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84172754 84174178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3270 nt):
ATGAACCTCCAGGCCCAGTCCAAGGCTCAGAGTAAACGCAAGCGTTGTCCTTTTGGGGACCAGGAGCCAG
CCGCCAAGGAACAGCCACCACCACTGCAGAGTCCACCACAGTCCCTCAGAGCTAAGGAGGAACAGTACGG
GGCCCACGAAGGTCCCACAGGGGTGGCCTCCACCACCCAGCCTGTGGAGCTGTCTCCTCCTAACAACCTG
GCTCTCCTGAACAGTGTGGTGTATGGATCTGAGAGGACCACGGCAGCCATGTTGTCCCAGCAGGCCCAAG
TAAGCTCGGTAAAGTGGCCCAGCTCTGTGATGGCTCCAGGGCGGGGCCTGGAACGTGGCGGAGGTGGAGG
CATCAGTGACAGTGGCTGGCAGCAGCAACCTGGCCAGCCCCCACCCCACTCCACGTGGAATCACCTGCCC
CTCTACGGTGGACCCAAAGGGAGCCCTCATCCAGGTGTGGGGGTACCTCCCTACTATAACCACCCGGAGG
CACTGAAGGGGAACAAACCTGGAGGTCCCCAGCTGGATCACTATGGAAACGCAGTGCAGCCCATGGTGCC
ACAGAAGGTGCAGCTGGAGGTGGGGAGGCCCCAAGCACCCTTGAACTCTTTCCATGCAGCCAAGAAACCC
CCAAACCAGACACTGCCCTTGCAACCCTTCCAGCTGGCATTTGGCCACCAGGTGAACCGTCAGGTCTTCC
GGCAGGGCCCTCAGCCCTCTAACCCCACCGCCTCCTTCCCACCTCAGAAGCAGCAGCAGCAACAGCAACC
GGCAGCCCTGCCCCAGATGCAGCTATTTGAGAACTACTACCCCATGCATCAACTGCCTTCGCAACAGCAC
CAGGACTTTGGCCTGGCACCAGGTGGGCCACTGGGACAGACCCACCTGGCTCACCGCAGCATGGCCCCTT
ACCCCTTTTCCCACAACCCAGATATGAACCCAGAACTGCGCAAGGCTCTCCTGCAGGACCCTGCTTCACA
GCCCGTGCTACCTCAGCCCCAGATGGCCTTCCCACGTCGCTCCCGCCGTCTCTCCAAGGAGGGAATTCTG
CCTTCCAACTCCCTCGATGGAGCTGGCACCCAACCTGGGCAGGAGCCCGCGAGCAATCTGTTCCTTCACC
ACTGGTCTCTGCCGCAGCCACCGCCAGGCACCCTGGGGCAGCCCCATTCTGAAGCCCTGGGATTCCCGTT
AGAACTGAGGGAGTCACAGATGCTGGCGGATGGGGACAGACTGGCACCCAATGGTCGGGAGCGGGAGCCT
CCCGCCATGGGTAATGAGGAGGTCATGAGAGCAGGGGGCCTCGGGGACTGTGGACAGATGATACGAAGTG
GGGTGATCCAGAGCACAAAACGGAGACGCAGGGTGTCCCAGGAGGCTAATTTGCTGACCCTGGCCCAGAA
GGCAGTGGAGCTGGCCTCTATGCAGGATGCCAATGGCTCTGAGGAGAAGCGGAAAAGCGTGTTGGCCACA
ACTTCCAGGTGTGGCGTGGAGTTTTCCGAGCCTGCCTTAGCCGCCAAGAGAGCTCGGGAGGAGAGTGGGA
TGGTACCCCTCATCATTCCTGTGTCTGTTCCCGTGAGGACTGTGGGTCCAACTGAGGTGGCCCAAGTCGG
AGGTGCTGACGAGGATGGGACTGGTCTTGAGCAGTACCCCACCGAGCACAAGCCGTCAGTCATCGTGACC
CGCAGGCGGTCCACCCGAGTTCCCGGGACAGATGCTGCAGCTCAGGCTGAAGACCTGAACGTCAAGTTGG
AAGGGGAGCCTTCCATGCGGAAACCAAAGCAGCGGCCGCGGCCGGAGCCCCTCATCATCCCCACCAAGGC
GGGCACTTTCATCGCCCCTCCTGTCTACTCCAACATCACCCCTTACCAGAGCCACCTGCGCTCTCCCGTG
CGCCTTGCTGACCACCCCTCTGAGCGGAGCTTTGAGCCCCCCCCTTACACACCACCCCCCATTCTCAGCC
CCGTCCGGGAAGGCTCTGGCCTCTACTTCAATGCCATCATATCAACCAGCAACATCCCGGCCCCTCCTCC
TATCACGCCAAAGAGTGCCCATCGAACCCTGCTCCGCTCTAATAGCTCTGAAGTCACCCCGCCTGTCCTC
TCTGTGATGGGGGAGGCCACCCCTGTGAGCATCGAACCACGAATCAACGTCGGGACCCGGTTCCAGGCAG
AAATCCCCATGATGAGAGACCGAGCGCTGGCAGCTTTTGACCCCCATAAGGCTGACTTGGTGTGGCAGCC
ATGGGAACATCTTGAGAGCAGCTGGGAGAAGCAGAGACAAGTGGATGACCTGCTGACAGCTGCCTGTTCA
AGCATTTTCCCTGGGGCCGGCACCAACCAGGAGCTGGCCCTGCACTATCTGCATGAGTCCCGGGGGGACA
TCCTGGAGGCGCTGAATAAGCTGCTACTGAGGAAGCCCCTGCGGCCTCACAATCACCCACTGGCGACATA
TCACTACACAGGCTCTGACCAGTGGAAGACGGCTGAGAGGAAGCTGTTCAACAAGGGCATTGCCATCTAT
AAGAAAGATTTCTTCCTGGTGCAGAAGCTGATCCAGACCAAGACTGTGGCCCAGTGCGTGGAATTCTACT
ACACCTACAAGAAACAGGTGAAAATCGGCCGCAACGGGACGCTCACCTTCGGCGACCTGGATATCGGTGA
CGAGAAGTCAGGCCAAGAGGAGGTTGAGGTGGACGTTAAGACTTCTCAGAAGTTCCCAAGGGTGCCTCCT
CCCAGAAGAGAGTCCCCAAGTGAAGAGAGGCTGGAGCCTAAGAGAGAAGTGACAGAACCCAGGAAGGAGG
GGGAGGAGGAGGTGCCAGACACCCAGGAGAAGGGAGAGCAGGAGGAGGGGCGTGAGCGCTGCCGGCGGGC
CGCTGCCGTCAAAGCTACACAGACACTACAGGCCAATGAGGCGGCCAATGACGTTCTCATTCTCCGGAGC
CATGAGCCCAACGCCCCGGGGTCTGCAGGTATCCAGACCTCAGAGAAGCCGAGGGAGGGGCCGGGGAAGT
CCCGAAGGGCACTGCCTTTCACAGAGAAGAAGAAAAAAGCCGAGGCATTTAATAAAACCCAGAACCAGGA
GAACACCTTCCCTTGTAAAAAGTGCGGCAGGGTGTTTTACAAGGTGAAGAGCCGCAGTGCTCACATGAAG
AGTCACGCAGAGCAAGAGAAGAAGGCCGCAGCTCTGAGGCTGAAGGAGAAGGAGGCTGCAGCGGCCGCCG
CACATCAGCAGGCGCTGAGAGAAGAGAGCGGCGAAGGGGAGAAGGGCTGA

Translation (1089 aa):
MNLQAQSKAQSKRKRCPFGDQEPAAKEQPPPLQSPPQSLRAKEEQYGAHEGPTGVASTTQPVELSPPNNL
ALLNSVVYGSERTTAAMLSQQAQVSSVKWPSSVMAPGRGLERGGGGGISDSGWQQQPGQPPPHSTWNHLP
LYGGPKGSPHPGVGVPPYYNHPEALKGNKPGGPQLDHYGNAVQPMVPQKVQLEVGRPQAPLNSFHAAKKP
PNQTLPLQPFQLAFGHQVNRQVFRQGPQPSNPTASFPPQKQQQQQQPAALPQMQLFENYYPMHQLPSQQH
QDFGLAPGGPLGQTHLAHRSMAPYPFSHNPDMNPELRKALLQDPASQPVLPQPQMAFPRRSRRLSKEGIL
PSNSLDGAGTQPGQEPASNLFLHHWSLPQPPPGTLGQPHSEALGFPLELRESQMLADGDRLAPNGREREP
PAMGNEEVMRAGGLGDCGQMIRSGVIQSTKRRRRVSQEANLLTLAQKAVELASMQDANGSEEKRKSVLAT
TSRCGVEFSEPALAAKRAREESGMVPLIIPVSVPVRTVGPTEVAQVGGADEDGTGLEQYPTEHKPSVIVT
RRRSTRVPGTDAAAQAEDLNVKLEGEPSMRKPKQRPRPEPLIIPTKAGTFIAPPVYSNITPYQSHLRSPV
RLADHPSERSFEPPPYTPPPILSPVREGSGLYFNAIISTSNIPAPPPITPKSAHRTLLRSNSSEVTPPVL
SVMGEATPVSIEPRINVGTRFQAEIPMMRDRALAAFDPHKADLVWQPWEHLESSWEKQRQVDDLLTAACS
SIFPGAGTNQELALHYLHESRGDILEALNKLLLRKPLRPHNHPLATYHYTGSDQWKTAERKLFNKGIAIY
KKDFFLVQKLIQTKTVAQCVEFYYTYKKQVKIGRNGTLTFGDLDIGDEKSGQEEVEVDVKTSQKFPRVPP
PRRESPSEERLEPKREVTEPRKEGEEEVPDTQEKGEQEEGRERCRRAAAVKATQTLQANEAANDVLILRS
HEPNAPGSAGIQTSEKPREGPGKSRRALPFTEKKKKAEAFNKTQNQENTFPCKKCGRVFYKVKSRSAHMK
SHAEQEKKAAALRLKEKEAAAAAAHQQALREESGEGEKG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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