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Report for CCDS40562.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40562.1 Public Mus musculus 9 Zfp810 23 108 98 CCDS HistoryNCBI Gene:235050Re-query CCDS DB by CCDS ID:40562.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40562.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086278.6 ENSMUSP00000083459.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086278.6Link to Ensembl Protein Viewer:ENSMUSP00000083459.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000086278Re-query CCDS DB by Protein ID:ENSMUSP00000083459
Original member NCBI NM_145612.2 NP_663587.1 Updated not alive Link to Nucleotide Sequence:NM_145612.2Link to Protein Sequence:NP_663587.1Re-query CCDS DB by Nucleotide ID:NM_145612Re-query CCDS DB by Protein ID:NP_663587
Current member NCBI NM_145612.3 NP_663587.1 Accepted alive Link to Nucleotide Sequence:NM_145612.3Link to Protein Sequence:NP_663587.1Re-query CCDS DB by Nucleotide ID:NM_145612Re-query CCDS DB by Protein ID:NP_663587Link to BLAST:NP_663587.1

Chromosomal Locations for CCDS 40562.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 22278225 22279280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22280453 22280559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22283168 22283260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22284017 22284143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22290539 22290541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1386 nt):
ATGGTGTTGGTGTCATTTGAGGACGTAGCCGTGGACTTCACCTGGGAGGAGTGGCAGGCCCTGGACGCTG
CTCAGAGGACCCTGTACAGGGACGTGATGCTGGAGACTTACAGCAGCCTGGTGTCCTTGGGGCACTGCAT
GGCCAAACCTGAGCTGATTTTCAACTTAGAACAGGGACTCGGGCCACGGAGCACAGCAGGAGCCTCAGTC
TGGAACCTCTCAGGTGTCAACAAAGTGAGTAGCCTGGTTGATACCATCCAGGAAAATGATAGCAGACATT
TCTGGCAAATTGAAATCAACAGCCATACAGCAAATGAAGAACTGGTTGAAGCAGAACTGAAGATTCATGA
GGAAATCCACCGAGGGGCCAAATCCTATGAATGTGAAGTGTGTTTGGAAGCATTTTACCTGAAGCCACAG
TATAGCACAAAGCAGAGCTATCACACATGCGAGAATCCATGTGACTGTAAGAAGTGTAGAGAAGCTTTCT
ATCCTAAGTCTACCCTCAGTCAGTATCAGAGGCTTGAGAGAGGTGAGAAACCCCATGCGTGCTTAGAGTG
TGGGAAATCCTTCTACTGCAAGTCTCACCTCACTGTGCATCAGAGGACCCACACCGGTGAGAAGCCTTAT
GACTGTAAAGAGTGCAGGAAGGCTTTCTACAGCAAATCCCAGCTCAATGTGCATCTGAGAATTCACACCG
GTGAGAAGCCTTATGAATGTAAAGACTGCAGGAAGGCTTTCTACCGCAATTCTGACCTCACTGTACATCA
GAGAACTCATACAGGTGAGAAGCCCTATGAATGTAAAGTCTGCAGGAAAGCTTTCTACTGCAATTCACAG
CTCACTGTACATCACAGGACTCATACAGGTGAGAAGCCTTATGAGTGTCAAGTATGCAATAAAGCTTTCT
ACTGCAAGTCACAACTCGCTGTACATCACAGGACTCATACGGGCGAGAAGCCTTATCAATGTAAAGAATG
CAGGAAGGCATTCCAGTGTAGGTCAGACCTCACTCGACATCAGAGAACTCATACTGGTGAGAGGCCATAT
GAATGTCCCGAGTGCAGGAAAGCTTTCTACCGCAAGTCAGACCTCACAGTACATCAGAGAACACATACAG
GGGAGAAGCCCTACGAATGTAAAGAGTGCAGGAAAGCTTTCTACTGTAATTCACAACTTACTGTACATCA
AAGACAACACACAGGCGAGAAGCCTTATGAATGTAAAGACTGCGGGAAAGCTTTTCAGTGCAAATACGAA
CTCACTCGACATCAGAGAACACACACAGGCGAGAAGCCTTATGGATGTAGAGAGTGCAAGAAAGCTTTTT
ACACCAAGTCAGATCTCACTCGGCATCTAAAGACTCACGCAGGGGACAAACCCTGA

Translation (461 aa):
MVLVSFEDVAVDFTWEEWQALDAAQRTLYRDVMLETYSSLVSLGHCMAKPELIFNLEQGLGPRSTAGASV
WNLSGVNKVSSLVDTIQENDSRHFWQIEINSHTANEELVEAELKIHEEIHRGAKSYECEVCLEAFYLKPQ
YSTKQSYHTCENPCDCKKCREAFYPKSTLSQYQRLERGEKPHACLECGKSFYCKSHLTVHQRTHTGEKPY
DCKECRKAFYSKSQLNVHLRIHTGEKPYECKDCRKAFYRNSDLTVHQRTHTGEKPYECKVCRKAFYCNSQ
LTVHHRTHTGEKPYECQVCNKAFYCKSQLAVHHRTHTGEKPYQCKECRKAFQCRSDLTRHQRTHTGERPY
ECPECRKAFYRKSDLTVHQRTHTGEKPYECKECRKAFYCNSQLTVHQRQHTGEKPYECKDCGKAFQCKYE
LTRHQRTHTGEKPYGCRECKKAFYTKSDLTRHLKTHAGDKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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