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Report for CCDS22393.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22393.1 Public Mus musculus 8 Ushbp1 23 108 98 CCDS HistoryNCBI Gene:234395Re-query CCDS DB by CCDS ID:22393.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22393.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049184.8 ENSMUSP00000045668.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049184.8Link to Ensembl Protein Viewer:ENSMUSP00000045668.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000049184Re-query CCDS DB by Protein ID:ENSMUSP00000045668
Original member Current member NCBI NM_181418.3 NP_852083.2 Accepted alive Link to Nucleotide Sequence:NM_181418.3Link to Protein Sequence:NP_852083.2Re-query CCDS DB by Nucleotide ID:NM_181418Re-query CCDS DB by Protein ID:NP_852083Link to BLAST:NP_852083.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_852083.2 680 Q8R370 680 100% 0 0

Chromosomal Locations for CCDS 22393.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 71385616 71385793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71385916 71386038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71386187 71386272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71387350 71387577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71388756 71389005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71390021 71390185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71390641 71390781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71390921 71391054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71392390 71392515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71394375 71394810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71395050 71395171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71395340 71395393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2043 nt):
ATGAGTGCCCGGGCCACACGGCCCCGAAGCCGTCGAGGGAGGCATCCTCTGCCTGGGGAGCTAGACCCTG
TAGCTGAGAGCTCAGAGGAAGTAGATGCCAACAATGGACGCTTCGAGACTAAACCTGAGCTGCATCAGGA
ATACCTTGGTCCTGGCCTTCAGAGCCCAAGGAACTGGATCAAGGAGGGTTGTGATGTGGGATCCCATGCG
GTTCTATCCTTGAGCCCAGAAGAACAGTGCGAGCCTGAGGTGGAAGCCCACCAGGTCCTGCAAGAAGCCC
CCCTGGATAGTGGCCCTGCTGAGATATCAGTACCCAGTGTGTATGAGACCTTGCAGTGCAGGCTGAGCTC
CCTTGAGGCAGTTGTAGCTGCCTTGCGCCACCACTCGCTAAGCTTTCCAAAGTCAGTGGAAGCAGAAGAC
AGAGACCAGGGGGCTCCGGGGCCCTTTGGTGATGAGAAAGAAGACGCAGGACCTGGACAGCAGGAGGCTG
CTCGCCTCATAGAGAGGAACGCCTGGCTGCGGCTAGCCCTGTGCAACCGGGAGGATGAGCTGGCATGCAC
TCAGGCTTCACTGCAGGACGCCCAGGCAGAGAAGGAGACTCTGCAGAGACAGGTACAGGAGCTGGAGGAT
TCCCTGATGCAGATGGAGGCCTCCCCACCTACCCCCATCCTCAGAGCAGGGCGTAGAAACAGCAACTCCA
GTACTTCTGGGGCAGAAAGGAGACCCTGGGTACCTCAGGACTCTTCCATGGCTCACCCCTTTCTCCAACG
CCTCCGGAGTGACTCCAGCACCCAGAGCTTTGGGTGCCTTTCCACACAGCATCCAGCCCCAGAGACGTAC
CTCATGGAAGACCAGATGGGGCAGCTCCAGGGGAGCATTGAGAAGTTGAAGTGCTTCAACCGTCTTCTTC
TGGCTGTGCTCCAGGGCTACAAGGGCCGTTGTGAGAGCCTCAGCATTAAGCTGGCCAAGCGGGAAGCCGA
GGCCACAGCCCTGCGCCTGGCTCTGCAGTATAGTGAGGACTGTGAGGAGGTGTATGAGGTGCTGCTAGCT
CTGAAGATGGCTGGCCTAGGAACTGGAGTTGGAACTACCAAGGGTGACCTGCAGGCTGCTGAGAAGGAGG
CCTCTAGGCTGCTGATGAAGAAGGAAGCAACCATGGAGGTAGAGACACCCCAGCCCAGCTCAGAGGGCAG
TGGTGTGGACAAGCCTACACCAGAGGAACTGGCCTCTCAGCTCCATGGCTATGTCCAGCATCTCCGGGAA
CGCTGGGCTCTGGTGAAGATCCCCGAAGAACTTGGCCCTGTCACTGCACCCAAGGCCACTATGCCCCATG
CAGAAGCAACAGTGCAGGCCATTCTGGAGATACAACCTGGCCCCACCTTGCCCCATCTGGAGAAGTCTCA
GATCCAGCAGGACCTAGCAGCTACTCGGGACAGGCTGGCTGATCTGGTGCTGAGGCTGCAGCTAACACAA
CGAGAGAAGCGTGGGTTGGAGCTGCGGGAGGCTGCACTGCGGGCCCAGGGCCCTGCCCACCAGCTACTCC
TGCAGCAGCTTCGCTGGGAGCGGGCTCACTTTGCGGGTGATGGCAGCAGTGGAGGCAGTAGCGAGGACCC
AAGCAGCGAGGAGGAGGCTGGGGAGGACAGACAGCAGCACTACCAGGGCCCTCTTGCCCTCCTGGATGGT
CAGATGGGCAAAGTGTGGGACTCTGAGAATGTGTCCCAGGAACTGTCAGCGTCCTTGGCCCGGGCAATAG
ACCTGCGGGCACAGCTGCAGTCCCTGCGGCAGCAGCTGGAACAGGTGACTCAGAAGGGCCGAACCAGACG
TGTTCAGAGTGCCGAGCTGTCCAGAGAACTGTGCAAGGCTCACAGTGCTCTGGCCTTGGCCTTCAGAGGA
GCCCACCGGAAGCAGGAAGAGCAACGCCTGAAGTTGGAGCAGCAGGTGGCTCGGTTGCAGGCTCAGCAGG
CAGAAGAGCTGGCAGTGCTGACAGCCACCGCTAGGGCCCTGGGGAAGCCTGGGGCACCCCAGCCAGCCCA
GACTTTCCTGTAG

Translation (680 aa):
MSARATRPRSRRGRHPLPGELDPVAESSEEVDANNGRFETKPELHQEYLGPGLQSPRNWIKEGCDVGSHA
VLSLSPEEQCEPEVEAHQVLQEAPLDSGPAEISVPSVYETLQCRLSSLEAVVAALRHHSLSFPKSVEAED
RDQGAPGPFGDEKEDAGPGQQEAARLIERNAWLRLALCNREDELACTQASLQDAQAEKETLQRQVQELED
SLMQMEASPPTPILRAGRRNSNSSTSGAERRPWVPQDSSMAHPFLQRLRSDSSTQSFGCLSTQHPAPETY
LMEDQMGQLQGSIEKLKCFNRLLLAVLQGYKGRCESLSIKLAKREAEATALRLALQYSEDCEEVYEVLLA
LKMAGLGTGVGTTKGDLQAAEKEASRLLMKKEATMEVETPQPSSEGSGVDKPTPEELASQLHGYVQHLRE
RWALVKIPEELGPVTAPKATMPHAEATVQAILEIQPGPTLPHLEKSQIQQDLAATRDRLADLVLRLQLTQ
REKRGLELREAALRAQGPAHQLLLQQLRWERAHFAGDGSSGGSSEDPSSEEEAGEDRQQHYQGPLALLDG
QMGKVWDSENVSQELSASLARAIDLRAQLQSLRQQLEQVTQKGRTRRVQSAELSRELCKAHSALALAFRG
AHRKQEEQRLKLEQQVARLQAQQAEELAVLTATARALGKPGAPQPAQTFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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