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Report for CCDS40028.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40028.1 Public Mus musculus 7 Emsy 23 108 98 CCDS HistoryNCBI Gene:233545Re-query CCDS DB by CCDS ID:40028.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40028.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000205276.1 ENSMUSP00000145858.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000205276.1Link to Ensembl Protein Viewer:ENSMUSP00000145858.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000205276Re-query CCDS DB by Protein ID:ENSMUSP00000145858
Original member Current member NCBI NM_172280.2 NP_758484.2 Accepted alive Link to Nucleotide Sequence:NM_172280.2Link to Protein Sequence:NP_758484.2Re-query CCDS DB by Nucleotide ID:NM_172280Re-query CCDS DB by Protein ID:NP_758484Link to BLAST:NP_758484.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_758484.2 1264 Q8BMB0-1 1264 100% 0 0

Chromosomal Locations for CCDS 40028.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 98590690 98590884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98593331 98593810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98594752 98595312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98597033 98597184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98600672 98600827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98602583 98602747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98610667 98610865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98612984 98613157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98615476 98615612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98619299 98619469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98621391 98621540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98626466 98626720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98630131 98630407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98637261 98637520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98641493 98641668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98645167 98645208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98646449 98646523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98647805 98647904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98654744 98654813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3795 nt):
ATGCCTGTTGTGTGGCCAACCCTTTTGGATCTCAGCAGGGATGAATGCAAACGGATTCTTCGAAAATTGG
AACTGGAGGCATATGCTGGAGTTATCAGTGCACTTCGGGCACAAGGGGACCTCACCAAGGAAAAGAAAGA
TCTTCTTGGAGAGCTCTCAAAAGTCCTTAGCATCTCAACAGAGCGCCACCGTGCTGAAGTTCGGAGAGCA
GTAAACGATGAACGGTTAACAACAATTGCACATAAAATGAATTTATCCTTATATTTGGGTGAAAGACCAA
GTTACAGTATGTCTGGACCTAATAGTTCTTCAGAGTGGTCCATCGAAGGACGTAGATTGGTACCTCTGAT
GCCCAGGCTGGTTCCCCAGACTGCCTTCACTGTAACAGCGAATGCTGTGGCCAATGCAGCTGTCCAGCAC
AATGCGTCCCTTCCTGTGCCTGCAGAGACAGCAAGCAAAGACGGCGTTAGCTGCTCAGATGAAGATGAAA
AACCCAGAAAACGCAGGCGAACAAACTCCTCTAGCTCCTCCCCTGTTGTCCTCAAGGAAGTTCCAAAGGC
TGTTGTTCCGGTCTCAAAGACGATCACTGTGCCTGTGAGTGGAAGTCCCAAGATGAGCAACATTATGCAG
AGCATTGCCAACTCCTTACCACCCCATATGTCACCTGTGAAAATAACGTTTACCAAACCATCAACACAGA
CAACAAACACAACAACACAGAAGGTTATTATAGTGACCACATCACCAAGTTCAACCTTTGTGCCCAACAT
TCTCTCCAAATCTCATAACTATGCAGCAGTCACTAAGCTTGTACCAACATCAGTCATTGCCTCCACGACT
CAGAAGCCACCTGTTGTTATAACTGCGTCCCAGGCCTCTCTGGTCACCAGTAGCAGCAATGGCAACAGCA
GTTCTACGTCATCACCTATTTCTAGTACAGTTGCAGTAACAACGGTGGTATCTTCCACACCGTCCGTGGT
CATGTCAACAGTAGCACAAGGTGTATCCACATCAGCAATCAAAGTGGCATCGACAAGACTTCCTTCCCCC
AAAAGCTTAGTGAGTGGCCCTACCCAGATTCTTGCACAGTTTCCTAAACAGCATCAGCAGTCTCCTAAGC
AGCAGTTACAGCAAGTACAACAACAGACACAGCAGCCAGTGGCCCAGCCTTCTTCAGTGTCTCAGCAGCA
GCAGCCTCAGCAGTCAGCATTGCCGCCTGGTATCAAACCTACCATCCAGATCAAACAGGAGTCAGGTGTT
AAAATCATCACACAGCAGGTTCAACCAAGTAAAATCTTACCCAAACCAGTGACTGCAACTCTACCCACCA
GTAGCAATTCCCCAATTATGGTGGTTAGCAGTAATGGTGCAATTATGACAACTAAACTGGTAACCACTCC
TACCGGTACTCAGGCAACCTATACCCGGCCAACAGTGAGCCCATCCTTAGGTCGTGTGGCTACAACCCCT
GGAGCTGCAACCTATGTGAAAACTACCAGTGGCAGCATCATCACTGTAGTACCCAAATCATTAGCTACCT
TGGGAGGCAAGATAATTAGCAGTAATATTGTTTCTGGAACGACTACCAAAATCACTACAATCCCAATGAC
TTCCAAGCCCAATGTGATTGTTGTACAAAAGACTACAGGAAAAGGAACGACCATTCAAGGCCTCCCTGGC
AAAAACGTTGTCACAACCTTGCTAAATGCTGGAGGAGAAAAGACTCTTCAGACAGTGCCAGCTGGAGCCA
AGCCAGCTATAATTACTGCTACAAGACCCATCACCAAAATGATTGTAACACAGCCCAAAGGAATAGGTTC
CGCAGTACAGCCAGCAGCTAAAATCATTCCAACAAAAATTGTGTATGGACAACAAGGGAAAACACAGGTT
CTAATTAAACCCAAACCAGTGACATTTCAAGCTACAGTTGTCAGTGAACAAACAAGGCAGCTGGTAACAG
AAACATTACAGCAAGCATCCAGGGTAGCAGATGCCAGTAATTCATCTGCTCAGGAAGGAAAAGAGGAGCC
ACAGGGTTACACAGACAGTAGTTCTTCTTCCACAGAGTCCTCCCAGAGTTCTCAAGATTCCCAGCCTGTA
GTTCATGTAATTGCTTCCCGGCGTCAGGATTGGTCAGAACATGAGATTGCAATGGAGACTAGCCCCACCA
TAATATATCAGGATGTATCCAGTGAATCACAATCAGCCACTTCAACAATCAAAGCTCTGTTAGAACTCCA
ACAGACAACAGTAAAGGAAAAATTGGAATCTAAACCAAGACAACCCACTATTGACTTGAGTCAAATGGCA
GTACCTATTCAGATGACCCAGGAAAAGAGACATTCTCCTGAGAGTCCATCCATTGCTGTGGTAGAGTCAG
AACTAGTTGCTGAATACATCACCACGGTCAGCCATCGCTCCCAGCCCCAACAGCCTTCCCAGCCCCAGCG
GACCCTGCTTCAACATGTGGCTCAGTCACAGACTGCGACGCAGACTTCGGTGGTAGTAAAGTCCATCCCA
GCGTCTTCCCCTGGAGCAATCACCCACATCATGCAGCAGGCATTAAGCAGTCACACCGCTTTTACGAAAC
ACAGTGAGGAACTTGGAACTGAGGAGGGTGAGGTTGAAGAGATGGACACATTGGATCCTCAGACAGGTCT
GTTTTACCGCTCTGCCCTGACACAATCGCAGTCAACCAAACAGCAGAAACTTAGCCAGCCCCAGCTGGAA
CAGACTCAGCTGCAAGTGAAAACTCTGCAGTGCTTCCAGACCAAACAGAAGCAGACCATCCACCTGCAGG
CAGACCAACTCCAGCACAAACTCACACAGATGCCCCAGCTCTCTATCAGGCATCAGAAACTGAATCCTCT
CCAGCAGGAACAAGCACAGCCCAAGCCAGATGCACAGCACACACAGCATACTGTGGTGGCCAAAGACAGG
CAGCTTCCTACCTTAATGGCACAGCCCCCGCAAACTGTAGTACAGGTGCTTGCCGTGAAAACCACACAGC
AGCTTCCTAAACTGCAGCAAGCTCCGAACCAACCAAAAATCTACGTGCAACCCCAAACTCCTCAGAGCCA
GATGGCACTCCCCTCTTCAGAGAAACAGCCTGCAAGCCAGGTGGAGCAGCCAATTATAACTCAAGGATCC
TCTGTTACAAAGATAACATTTGAGGGGCGCCAGCCTCCCACAGTTACAAAGATAACTGGTGGCAGTTCTG
TTCCTAAGCTGACATCACCAGTTACAAGCATATCTCCCATTCAGGCCTCTGAGAAGACAGCAGTGTCAGA
CATTTTGCAAATGTCTTTGATGGAAGCTCAGATTGATACAAATGTAGAACATATGGTAGTGGATCCCCCA
AAGAAGGCTCTAGCCACCAATGTGCTCACTGGTGAGGCAGGAGCTCTACCCTCCACCCATGTGGTGGTGG
CAGGGATGACGAAATGTAGAGAGTCCTGTTCAAGTCCATCTGCTGTTGGCCCTCCCCTAACGACCAGAAA
AATCGAAGCAGCAGGAGTGCCTACGACAGGCCAGTTCATGCGTATTCAGAATGTAGGCCAAAAGAAAGCT
GAAGAGAGCCCAACAGAAATTATCATCCAGGCCATTCCCCAGTATGCTATTCCTTGTCACTCCAGCTCCA
ATGTGGTGGTGGAGCCCAGTGGGCTTCTAGAGTTGAACAACTTCACCAGTCAGCAGCTAGATGACGACGA
GACAGCCATGGAGCAGGACATAGACAGCAGCACGGAGGACGGGACTGAGCCCAGCCCCTCTCAGAGCGCT
GTAGAACGGTCCTAG

Translation (1264 aa):
MPVVWPTLLDLSRDECKRILRKLELEAYAGVISALRAQGDLTKEKKDLLGELSKVLSISTERHRAEVRRA
VNDERLTTIAHKMNLSLYLGERPSYSMSGPNSSSEWSIEGRRLVPLMPRLVPQTAFTVTANAVANAAVQH
NASLPVPAETASKDGVSCSDEDEKPRKRRRTNSSSSSPVVLKEVPKAVVPVSKTITVPVSGSPKMSNIMQ
SIANSLPPHMSPVKITFTKPSTQTTNTTTQKVIIVTTSPSSTFVPNILSKSHNYAAVTKLVPTSVIASTT
QKPPVVITASQASLVTSSSNGNSSSTSSPISSTVAVTTVVSSTPSVVMSTVAQGVSTSAIKVASTRLPSP
KSLVSGPTQILAQFPKQHQQSPKQQLQQVQQQTQQPVAQPSSVSQQQQPQQSALPPGIKPTIQIKQESGV
KIITQQVQPSKILPKPVTATLPTSSNSPIMVVSSNGAIMTTKLVTTPTGTQATYTRPTVSPSLGRVATTP
GAATYVKTTSGSIITVVPKSLATLGGKIISSNIVSGTTTKITTIPMTSKPNVIVVQKTTGKGTTIQGLPG
KNVVTTLLNAGGEKTLQTVPAGAKPAIITATRPITKMIVTQPKGIGSAVQPAAKIIPTKIVYGQQGKTQV
LIKPKPVTFQATVVSEQTRQLVTETLQQASRVADASNSSAQEGKEEPQGYTDSSSSSTESSQSSQDSQPV
VHVIASRRQDWSEHEIAMETSPTIIYQDVSSESQSATSTIKALLELQQTTVKEKLESKPRQPTIDLSQMA
VPIQMTQEKRHSPESPSIAVVESELVAEYITTVSHRSQPQQPSQPQRTLLQHVAQSQTATQTSVVVKSIP
ASSPGAITHIMQQALSSHTAFTKHSEELGTEEGEVEEMDTLDPQTGLFYRSALTQSQSTKQQKLSQPQLE
QTQLQVKTLQCFQTKQKQTIHLQADQLQHKLTQMPQLSIRHQKLNPLQQEQAQPKPDAQHTQHTVVAKDR
QLPTLMAQPPQTVVQVLAVKTTQQLPKLQQAPNQPKIYVQPQTPQSQMALPSSEKQPASQVEQPIITQGS
SVTKITFEGRQPPTVTKITGGSSVPKLTSPVTSISPIQASEKTAVSDILQMSLMEAQIDTNVEHMVVDPP
KKALATNVLTGEAGALPSTHVVVAGMTKCRESCSSPSAVGPPLTTRKIEAAGVPTTGQFMRIQNVGQKKA
EESPTEIIIQAIPQYAIPCHSSSNVVVEPSGLLELNNFTSQQLDDDETAMEQDIDSSTEDGTEPSPSQSA
VERS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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