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Report for CCDS7245.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7245.1 Public Homo sapiens 10 CSTF2T 24 110 108 CCDS HistoryNCBI Gene:23283Re-query CCDS DB by CCDS ID:7245.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7245.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000331173.6 ENSP00000332444.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000331173.6Link to Ensembl Protein Viewer:ENSP00000332444.4Re-query CCDS DB by Nucleotide ID:ENST00000331173Re-query CCDS DB by Protein ID:ENSP00000332444
Original member Current member NCBI NM_015235.3 NP_056050.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015235.3Link to Protein Sequence:NP_056050.1Re-query CCDS DB by Nucleotide ID:NM_015235Re-query CCDS DB by Protein ID:NP_056050Link to BLAST:NP_056050.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056050.1 616 Q9H0L4 616 100% 0 0

Chromosomal Locations for CCDS 7245.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 51697699 51699549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1851 nt):
ATGTCGAGTTTGGCGGTGAGAGACCCGGCAATGGATCGATCACTGCGTTCCGTGTTCGTGGGGAACATTC
CA
TATGAGGCAACTGAGGAGCAGTTAAAGGACATTTTCTCGGAGGTTGGTTCTGTTGTCAGTTTCCGGCT
G
GTATACGATAGAGAGACGGGAAAACCCAAGGGCTATGGCTTCTGCGAATACCAAGACCAGGAGACCGCG
CTT
AGTGCCATGCGGAACCTCAATGGGCGGGAGTTCAGTGGGAGAGCGCTTCGGGTGGACAATGCTGCCA
GT
GAAAAGAATAAGGAGGAGTTAAAGAGCCTTGGGCCTGCAGCGCCCATTATTGACTCACCCTATGGGGA
T
CCCATCGATCCAGAAGATGCCCCTGAATCGATTACCAGAGCAGTAGCCAGTCTCCCCCCGGAGCAGATG
TTT
GAGCTGATGAAGCAGATGAAGCTCTGTGTCCAAAACAGCCACCAGGAAGCTCGAAACATGTTACTTC
AA
AATCCACAACTGGCTTATGCACTGTTGCAGGCACAAGTAGTGATGAGAATCATGGATCCAGAGATTGC
T
CTGAAAATTCTGCATCGGAAGATACATGTCACACCACTGATCCCAGGCAAATCTCAGTCTGTGTCTGTC
TCT
GGCCCTGGCCCTGGCCCTGGCCCTGGGCTCTGCCCAGGACCTAATGTTCTGCTGAACCAGCAGAATC
CT
CCAGCTCCTCAGCCTCAGCATTTGGCTAGAAGACCTGTGAAGGACATTCCTCCTCTGATGCAGACTCC
T
ATCCAGGGTGGAATTCCAGCTCCAGGGCCAATACCAGCTGCAGTTCCCGGAGCTGGTCCTGGTTCCTTA
ACT
CCTGGAGGAGCAATGCAGCCCCAACTTGGAATGCCAGGGGTTGGCCCAGTGCCTTTAGAGCGGGGAC
AA
GTGCAGATGTCAGATCCTAGAGCTCCTATACCTCGCGGACCCGTGACTCCTGGTGGTCTGCCTCCTCG
A
GGACTGTTAGGAGATGCTCCAAATGACCCACGTGGAGGGACTTTGCTTTCAGTCACTGGAGAAGTGGAG
CCC
AGAGGTTATCTGGGTCCACCCCATCAGGGTCCCCCCATGCATCATGCCTCTGGTCATGACACTCGTG
GC
CCTTCCTCACATGAGATGAGGGGAGGGCCATTAGGAGATCCCAGACTGCTAATTGGAGAGCCCAGAGG
C
CCCATGATAGATCAAAGGGGTCTACCTATGGATGGTAGAGGTGGTAGAGATTCTCGAGCGATGGAGACT
CGT
GCCATGGAAACTGAGGTCTTAGAGACACGTGTAATGGAGAGGAGAGGAATGGAGACCTGTGCGATGG
AA
ACCAGAGGGATGGAAGCAAGGGGCATGGATGCAAGAGGATTGGAGATGAGGGGCCCTGTCCCCAGTTC
A
AGAGGCCCTATGACTGGTGGAATTCAGGGTCCTGGTCCCATTAATATAGGGGCAGGTGGCCCTCCTCAG
GGA
CCCAGACAGGTCCCAGGCATTTCAGGGGTGGGGAATCCTGGAGCTGGTATGCAGGGTACAGGCATAC
AA
GGAACAGGCATGCAGGGAGCAGGCATACAAGGAGGAGGGATGCAGGGGGCAGGCATACAAGGAGTCAG
T
ATACAAGGAGGAGGTATACAAGGAGGAGGTATACAGGGGGCAAGCAAGCAAGGTGGAAGCCAGCCTAGC
AGT
TTTAGTCCTGGGCAGAGCCAGGTCACTCCACAGGATCAGGAGAAGGCAGCTTTGATCATGCAGGTTC
TT
CAACTGACTGCAGATCAGATTGCCATGCTGCCCCCTGAGCAAAGGCAGAGTATCCTGATTTTAAAGGA
A
CAAATCCAGAAATCCACTGGAGCGTCTTGA


Translation (616 aa):
MSSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETA
L
SAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAPIIDSPYGDPIDPEDAPESITRAVASLPPEQM
F
ELMKQMKLCVQNSHQEARNMLLQNPQLAYALLQAQVVMRIMDPEIALKILHRKIHVTPLIPGKSQSVSV
S
GPGPGPGPGLCPGPNVLLNQQNPPAPQPQHLARRPVKDIPPLMQTPIQGGIPAPGPIPAAVPGAGPGSL
T
PGGAMQPQLGMPGVGPVPLERGQVQMSDPRAPIPRGPVTPGGLPPRGLLGDAPNDPRGGTLLSVTGEVE
P
RGYLGPPHQGPPMHHASGHDTRGPSSHEMRGGPLGDPRLLIGEPRGPMIDQRGLPMDGRGGRDSRAMET
R
AMETEVLETRVMERRGMETCAMETRGMEARGMDARGLEMRGPVPSSRGPMTGGIQGPGPINIGAGGPPQ
G
PRQVPGISGVGNPGAGMQGTGIQGTGMQGAGIQGGGMQGAGIQGVSIQGGGIQGGGIQGASKQGGSQPS
S
FSPGQSQVTPQDQEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKSTGAS




Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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