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Report for CCDS20287.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20287.1 Public Mus musculus 6 Paip2b 23 108 98 CCDS HistoryNCBI Gene:232164Re-query CCDS DB by CCDS ID:20287.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20287.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058383.8 ENSMUSP00000050404.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058383.8Link to Ensembl Protein Viewer:ENSMUSP00000050404.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000058383Re-query CCDS DB by Protein ID:ENSMUSP00000050404
Original member Current member NCBI NM_146169.2 NP_666281.2 Accepted alive Link to Nucleotide Sequence:NM_146169.2Link to Protein Sequence:NP_666281.2Re-query CCDS DB by Nucleotide ID:NM_146169Re-query CCDS DB by Protein ID:NP_666281Link to BLAST:NP_666281.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666281.2 136 Q91W45 136 100% 0 0

Chromosomal Locations for CCDS 20287.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 83808836 83808892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83809899 83810075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83814722 83814869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83831271 83831299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (411 nt):
ATGACGACGCTGAACACAGGCTCCGCAAGAATCTCCATAATGAATGGATCCAGTGTGGCAAGTACATCAC
CCAGTGTGAAATGCAAAGAAGACCAAGGATTAAATGGACATGAGGAAAAGGAAAACCCATTTGCAGAATA
CATGTGGATGGAAAATGAAGAGGATTTCAACAGACAGGTGGAGGAAGAGCTACAGGAGCAAGACTTCTTG
GACCGCTGCTTCCAGGAGATGCTGGATGAAGAGGACCAGGACTGGTTCATCCCAGCACGAGACCTGCCTC
AGGCTGTGGGGCACTTACAACAGCAGTTAAATGGACTATCAGTTGGTGACAGTCATGAATCTGAAGACAT
TTTGAGCAAAAGTAACCTGAATCCAGATGCCAAGGAGTTTGTTCCAGGAGTGAAGTACTGA

Translation (136 aa):
MTTLNTGSARISIMNGSSVASTSPSVKCKEDQGLNGHEEKENPFAEYMWMENEEDFNRQVEEELQEQDFL
DRCFQEMLDEEDQDWFIPARDLPQAVGHLQQQLNGLSVGDSHESEDILSKSNLNPDAKEFVPGVKY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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