NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39124.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39124.1 Public Mus musculus 5 Tmprss11d 23 108 98 CCDS HistoryNCBI Gene:231382Re-query CCDS DB by CCDS ID:39124.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 39124.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031175.11 ENSMUSP00000031175.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031175.11Link to Ensembl Protein Viewer:ENSMUSP00000031175.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000031175Re-query CCDS DB by Protein ID:ENSMUSP00000031175
Original member Current member NCBI NM_145561.2 NP_663536.1 Accepted alive Link to Nucleotide Sequence:NM_145561.2Link to Protein Sequence:NP_663536.1Re-query CCDS DB by Nucleotide ID:NM_145561Re-query CCDS DB by Protein ID:NP_663536Link to BLAST:NP_663536.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663536.1 417 Q8VHK8-1 417 100% 0 0

Chromosomal Locations for CCDS 39124.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 86303611 86303772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86306267 86306409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86309264 86309523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86326408 86326585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86327618 86327656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86331071 86331225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86337227 86337294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86338781 86338899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86339480 86339601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86373345 86373352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1254 nt):
ATGTATAGGCCAAGACCAATGCTATCACCGTCAAGATTCTTCACTCCCTTTGCAGTAGCTTTCGTTGTCA
TAATAACGGTAGGGCTCCTGGCCATGATGGCAGGTCTACTTATTCACTTTTTAGCTTTTGACAAGAAAGC
TTACTTTTATCATAGCAGCTTTCAAATCCTAAACGTTGAATACACTGAGGCTTTAAACTCACCAGCTACA
CACGAATACAGAACCTTGAGTGAAAGAATTGAGGCTATGATTACTGATGAATTTCGAGGATCAAGTCTAA
AAAGTGAGTTTATCAGGACACATGTTGTCAAACTAAGAAAAGAAGGGACTGGTGTGGTTGCGGATGTTGT
CATGAAATTTCGATCTAGTAAACGTAACAACAGAAAGGTAATGAAAACCAGAATTCAATCTGTGCTACGA
AGACTCAGCAGCTCTGGAAACTTGGAAATAGCCCCTTCGAATGAGATAACATCACTCACTGACCAGGATA
CAGAAAATGTTTTGACTCAAGAATGTGGAGCACGTCCAGACCTTATAACACTGTCAGAAGAGAGAATCAT
TGGAGGCATGCAAGCTGAGCCCGGTGACTGGCCCTGGCAAGTCAGTCTACAGCTCAATAATGTCCACCAC
TGTGGAGGTGCCCTGATCAGTAACATGTGGGTCCTGACAGCAGCTCATTGCTTCAAAAGCTATCCTAATC
CTCAATATTGGACAGCCACCTTTGGGGTTTCTACAATGAGCCCTAGGCTGAGAGTGAGAGTAAGGGCTAT
TTTAGCCCACGACGGGTACAGCTCCGTAACTCGTGACAATGACATCGCAGTTGTACAACTTGACAGATCT
GTCGCCTTTTCCAGAAATATCCATAGGGTATGTCTCCCAGCAGCAACCCAAAATATCATCCCTGGTTCTG
TCGCATATGTTACAGGATGGGGATCTCTCACATATGGAGGCAACGCAGTCACAAATCTACGGCAAGGAGA
GGTCAGAATAATAAGTTCAGAGGAATGCAATACGCCAGCTGGTTACAGTGGAAGTGTCTTGCCAGGAATG
CTGTGTGCTGGAATGCGTTCAGGGGCCGTGGATGCATGCCAGGGTGATTCAGGTGGCCCGCTAGTACAAG
AAGACTCAAGGCGGCTTTGGTTTGTTGTGGGCATTGTGAGCTGGGGATATCAGTGTGGCCTCCCAAATAA
GCCAGGCGTGTATACTCGAGTGACAGCCTACCGCAACTGGATCAGACAGCAGACGGGAATCTAG

Translation (417 aa):
MYRPRPMLSPSRFFTPFAVAFVVIITVGLLAMMAGLLIHFLAFDKKAYFYHSSFQILNVEYTEALNSPAT
HEYRTLSERIEAMITDEFRGSSLKSEFIRTHVVKLRKEGTGVVADVVMKFRSSKRNNRKVMKTRIQSVLR
RLSSSGNLEIAPSNEITSLTDQDTENVLTQECGARPDLITLSEERIIGGMQAEPGDWPWQVSLQLNNVHH
CGGALISNMWVLTAAHCFKSYPNPQYWTATFGVSTMSPRLRVRVRAILAHDGYSSVTRDNDIAVVQLDRS
VAFSRNIHRVCLPAATQNIIPGSVAYVTGWGSLTYGGNAVTNLRQGEVRIISSEECNTPAGYSGSVLPGM
LCAGMRSGAVDACQGDSGGPLVQEDSRRLWFVVGIVSWGYQCGLPNKPGVYTRVTAYRNWIRQQTGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH