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Report for CCDS38987.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38987.1 Public Mus musculus 4 Ajap1 23 108 98 CCDS HistoryNCBI Gene:230959Re-query CCDS DB by CCDS ID:38987.1See the combined annotation on chromosome 4 in Sequence Viewer

Public Note for CCDS 38987.1
This CCDS ID represents the mouse ortholog of the protein described in PMIDs: 14595118 and 17267690. This variant is supported by BC147230.1 and BE648223.1. It should be noted that this transcript is predicted to undergo nonsense-mediated mRNA decay (NMD). However, the protein is represented because it was detected endogenously in human in PMID: 14595118. It is likely that the majority of transcripts representing this variant will undergo NMD, while some low level of NMD escape may allow for the expression of this protein.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 38987.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105646.2 ENSMUSP00000101271.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105646.2Link to Ensembl Protein Viewer:ENSMUSP00000101271.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105646Re-query CCDS DB by Protein ID:ENSMUSP00000101271
Original member Current member NCBI NM_001099299.1 NP_001092769.1 Accepted alive Link to Nucleotide Sequence:NM_001099299.1Link to Protein Sequence:NP_001092769.1Re-query CCDS DB by Nucleotide ID:NM_001099299Re-query CCDS DB by Protein ID:NP_001092769Link to BLAST:NP_001092769.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001092769.1 412 A2ALI5 412 100% 0 0

Chromosomal Locations for CCDS 38987.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 153382265 153382337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153384806 153385048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153386426 153386513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153432048 153432853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153482129 153482157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1239 nt):
ATGTGGATCCAACAGCTTTTAGGACTCAGCTCCATGTCTATCCGCTGGCCCGGCCGCTCTCTCGGAAGCC
ATGCCTGGATACTGATAGCCATGCTGCAGCTTGCGGTCGACTTCCCATCCTGTGACTCACTAGGCCCTGG
GCCCGAGTTCCGGCTCCTGTCACGCCCACAGAGGCCCCAGCGGCTGTGGAGTCTGCGAAGTGGACCCCCA
ACGAGGCTACCGACACCGGCCTGGAGTCCCCGTGCTGCCCGGGCAGAACGTGCCCACGGACCCATACAGA
TGCAGACTCCCCGTGCTCGGAGGGCCCACAGGCCCAGGGACCAGGTAGCCACCCTCGGACCCAAAGGGGG
ACTCACCAAGCCCCCAGCTGCCACCAGGTCGAGCCCTTCCCTCGCCTCTGCGACGGCCTCATCCTCCATA
GTGACTGCTGGGGCTGCAGAGCACCAGGGCCTCCTAAGACGGGGTAGGAGGCACACACATGATACAGAGT
TCAACGATTTCGACTTCCGTGGTGGCAGGCCCACGACAGAGACAGAATTCATAGCCTGGGGGCCTACGGG
GGATGAGGACGCCCTGGAGTCCAACACCTTCCCTGGTGGTTTCGGCCCCACCACGGTCTCCATCTTGCAA
ACACGGAAGACAACGGTGGCCACCACCACCACCACCACCGCGGCCAGCACGGCCACCGCCATGACACTGC
AGACTAAGGGGGTCACCGAGTCCCTGGATCCCTGGAAAAGGACCCCTGTTGGGGTTAGCACAACGGAGCC
TTCCACTAGTCCCAGCAGCAATGGGAAAGACATCCAGCCCCCGAGGATCTTAGGGGAGACCTCAGGTCTG
GCTGTGCATCAGATCATCACCATCACCGTCTCCCTCATCATGGTCATCGCTGCGCTCATCACAACTCTTG
TCTTAAAAAATTGCTGTGCCCCAAGCGGGCACACTCGGAGGAATAGCCACCAGCGGAAGATGAATCAGCA
GGAGGAGAGTTGCCAGAACTTGACGGACTTCACCCCGGCCCGGGTGCCCAGCAGTGTGGACATCTTCACC
GCCTATAATGAGACACTGCAGTGTTCTCACGAGTGTGTCAGGGCCTCTGTGCCCGTGTATGCCGACGAGA
CGCTGCACTCGACCGGGGAGTACAAGTCCACATTCAACGGAAACCGAACATCCTCTGCGGATAGGCATCT
CATCCCTGTGGCCTTTGTGTCTGAGAAATGGTTTGAAATCTCCTGCTGA

Translation (412 aa):
MWIQQLLGLSSMSIRWPGRSLGSHAWILIAMLQLAVDFPSCDSLGPGPEFRLLSRPQRPQRLWSLRSGPP
TRLPTPAWSPRAARAERAHGPIQMQTPRARRAHRPRDQVATLGPKGGLTKPPAATRSSPSLASATASSSI
VTAGAAEHQGLLRRGRRHTHDTEFNDFDFRGGRPTTETEFIAWGPTGDEDALESNTFPGGFGPTTVSILQ
TRKTTVATTTTTTAASTATAMTLQTKGVTESLDPWKRTPVGVSTTEPSTSPSSNGKDIQPPRILGETSGL
AVHQIITITVSLIMVIAALITTLVLKNCCAPSGHTRRNSHQRKMNQQEESCQNLTDFTPARVPSSVDIFT
AYNETLQCSHECVRASVPVYADETLHSTGEYKSTFNGNRTSSADRHLIPVAFVSEKWFEISC


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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