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Report for CCDS18746.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18746.1 Public Mus musculus 4 Wdtc1 23 108 98 CCDS HistoryNCBI Gene:230796Re-query CCDS DB by CCDS ID:18746.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18746.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043305.13 ENSMUSP00000040647.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043305.13Link to Ensembl Protein Viewer:ENSMUSP00000040647.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000043305Re-query CCDS DB by Protein ID:ENSMUSP00000040647
Original member Current member NCBI NM_199306.4 NP_955010.1 Accepted alive Link to Nucleotide Sequence:NM_199306.4Link to Protein Sequence:NP_955010.1Re-query CCDS DB by Nucleotide ID:NM_199306Re-query CCDS DB by Protein ID:NP_955010Link to BLAST:NP_955010.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_955010.1 677 Q80ZK9 677 100% 0 0

Chromosomal Locations for CCDS 18746.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 133294188 133294385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133295198 133295390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133296416 133296593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133297420 133297655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133300561 133300734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133301719 133301827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133302383 133302455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133303551 133303666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133304151 133304245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133305824 133306006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133308749 133308936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133313307 133313418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133313760 133313806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133322172 133322255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133323828 133323875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2034 nt):
ATGGCAAAAGTCAACATAACTAGAGACCTCATTCGTAGGCAAGTCAAGGAGCGGGGTGCCCTGAGCTTTG
AACGGCGATATCATGTCACAGACCCCTTTATCCGACGGCTGGGCCTGGAGGCGGAGCTTCAGGGACACTC
AGGCTGTGTCAACTGTCTGGAGTGGAATGAGAAAGGAGACCTGCTGGCGTCTGGTTCCGACGACCAGCAC
ACCATTGTGTGGGACCCACTGCACCACAAGAAGCTGCTGTCCATGCACACAGGACACACAGCAAATATCT
TCTCTGTCAAGTTCCTGCCTCATGCTGGAGACCGCATTTTGATCACGGGGGCAGCTGACTCCAAGGTGCA
CGTCCACGACCTTACGGTAAAGGAGACGATCCACATGTTTGGAGACCACACAAACCGGGTGAAGCGCATT
GCCACGGCGCCCATGTGGCCTAACACGTTCTGGAGCGCCGCAGAGGATGGGCTTATCCGCCAGTATGACC
TTCGGGAGAACAGCAAACACTCAGAGGTGCTGATTGACCTAACAGAATACTGTGGCCCGATGGTGGAGGC
CAAGTGCCTCACCGTCAACCCCCAGGATAACAACTGCCTGGCAGTAGGGGCCAGTGGGCCCTTTGTGAGG
CTCTATGACATTCGAATGATCCACAACCACAGAAAGAGCATGAGGCAGAGCCCTTCCGCAGGCGTGCATA
CCTTCTGTGACCGACAGAAGCCCCTTCCGGACGGTGCAGCGCAGTATTATGTCGCAGGTCACCTGCCGGT
GAAGCTGCCTGACTATAACAGCCGTCTGAGAGTGCTGGTTGCCACCTATGTGACCTTCAGCCCCAATGGC
ACAGAGCTGCTAGTCAACATGGGAGGAGAGCAGGTGTATCTGTTTGACTTGACTTACAAGCAACGGCCAT
ATACCTTCCTCTTGCCTAGAAAATGCCACTCCGTGGAAGTCCAGAACGGCAAGATGTCTACTAACGGGGT
GTCCAACGGCGTGTCGAATGGCCTACACCTTCACAGCAACGGCTTCCGGCTGCCAGAGAGCAAGGGGTGC
ATCAGCCCCCAGGTGGAGCTGCCCCCATACCTGGAGCGTGTGAAGCAGCAGGCCAATGAAGCCTTCGCCT
GCCAGCAGTGGACCCAGGCCATCCAGCTCTACAGCCAGGCTGTGCAGAAGGCCCCGCACAACGCTATGCT
CTATGGCAACCGAGCTGCCGCCTACATGAAGCGCAAGTGGGACGGGGACCACTATGATGCCCTCCGGGAC
TGCCTCAAGGCCATCTCCCTAAACCCTTGCCACCTGAAGGCACACTTCCGTCTGGCCCGGTGCCTCTTTG
AACTGAAGTATGTGGCCGAGGCTCTGGAGTGCCTGGATGACTTCAAAGGGAAGTTCCCAGAGCAGGCCCA
CAGCAGTGCATGTGACGCATTAGGCCGGGACATCACAGCTGCCCTTTTCTCCAAAAGTGATGGTGAGGAG
AAGAAGGCAGCTGGTGGTGGTGGTGGTCCAGTTCGCCTTCGAAGCACAAGTCGCAAGGACTCCATCTCAG
AAGACGAAATGGTGCTACGGGAACGGAGCTACGACTATCAGTTCCGCTACTGTGGGCACTGCAACACCAC
CACGGATATCAAGGAGGCCAATTTCTTTGGCAGCAATGCTCAGTACATTGTCAGCGGCTCTGATGACGGC
TCCTTCTTCATCTGGGAAAAGGAGACCACCAACCTCGTCCGAGTGCTGCAGGGGGATGAGTCCATTGTCA
ACTGCTTGCAGCCCCATCCCAGCTACTGCTTCCTGGCCACCAGTGGCATCGACCCTGTTGTGCGACTGTG
GAACCCACGACCAGAGAGTGAAGACCTCACAGGCCGAGTTGTGGAAGATATGGAGGGTGCATCTCAGGCC
AACCAGCGGCGCATGAATGCCAACCCCCTGGAGGCGATGCTGCTGGACATGGGCTATCGGATCACAGGCC
TGAGCAGCGGGGGCGCCGGGGCCTCTGATGACGAGGACAGCGCAGAGGGCCAGGTGCAGTGCCGGCCCAG
CTAG

Translation (677 aa):
MAKVNITRDLIRRQVKERGALSFERRYHVTDPFIRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQH
TIVWDPLHHKKLLSMHTGHTANIFSVKFLPHAGDRILITGAADSKVHVHDLTVKETIHMFGDHTNRVKRI
ATAPMWPNTFWSAAEDGLIRQYDLRENSKHSEVLIDLTEYCGPMVEAKCLTVNPQDNNCLAVGASGPFVR
LYDIRMIHNHRKSMRQSPSAGVHTFCDRQKPLPDGAAQYYVAGHLPVKLPDYNSRLRVLVATYVTFSPNG
TELLVNMGGEQVYLFDLTYKQRPYTFLLPRKCHSVEVQNGKMSTNGVSNGVSNGLHLHSNGFRLPESKGC
ISPQVELPPYLERVKQQANEAFACQQWTQAIQLYSQAVQKAPHNAMLYGNRAAAYMKRKWDGDHYDALRD
CLKAISLNPCHLKAHFRLARCLFELKYVAEALECLDDFKGKFPEQAHSSACDALGRDITAALFSKSDGEE
KKAAGGGGGPVRLRSTSRKDSISEDEMVLRERSYDYQFRYCGHCNTTTDIKEANFFGSNAQYIVSGSDDG
SFFIWEKETTNLVRVLQGDESIVNCLQPHPSYCFLATSGIDPVVRLWNPRPESEDLTGRVVEDMEGASQA
NQRRMNANPLEAMLLDMGYRITGLSSGGAGASDDEDSAEGQVQCRPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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