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Report for CCDS18273.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18273.1 Public Mus musculus 4 Megf9 23 108 98 CCDS HistoryNCBI Gene:230316Re-query CCDS DB by CCDS ID:18273.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18273.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107359.8 ENSMUSP00000102982.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107359.8Link to Ensembl Protein Viewer:ENSMUSP00000102982.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107359Re-query CCDS DB by Protein ID:ENSMUSP00000102982
Original member Current member NCBI NM_172694.2 NP_766282.1 Accepted alive Link to Nucleotide Sequence:NM_172694.2Link to Protein Sequence:NP_766282.1Re-query CCDS DB by Nucleotide ID:NM_172694Re-query CCDS DB by Protein ID:NP_766282Link to BLAST:NP_766282.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766282.1 600 Q8BH27 600 100% 0 0

Chromosomal Locations for CCDS 18273.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 70433080 70433531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70435217 70435486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70448663 70448806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70455861 70456000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70488131 70488332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70534228 70534822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1803 nt):
ATGAATGGCGGAGCCGAGCGCGCCATGAGGAGCCTGCCGAGCCTGGGCGGCCTCGCCCTGTTGTGCTGCG
CGGCCGCCGCAGCCGCTTCCACAGCCTCGGCAGGGAATGTCACCGGTGGCGGCGGGGCCGAGGGGCAGGT
GGTCCCGTCGCCCAGCCCGGGGCTTCGGGACCAAGCCAGCAGCCCCTTCCCTAAGACCGCGGCTCCCACC
GCGCAGGCCCCGCGGACCGGTCCCCCGCGCACCACAGTCCGCAAAACCGGGGCTACAACCCCGTCAGCCG
GCTCCCCGGAGATCATTCCTCCTCTTCGCACCAGCGCACAACCCGCTGCCACCCCCTTCCCGGCTCTGGA
CCTCTCGCCCGCCACCCCTTCGGAGGACGGACACACTCCCACCACGGAATCACCACCCTCCAGACCCGCG
CCCACCACCCTTGCGAGCACAGTTGGCCAGCCGCCGACCACCTCTGTAGTCACCACCGCTCAGGCTTCCA
GCACTCCAGGGACCCCAACTGCCGAGTCCCCGGACAGAAGCAGCAACAGTAGCGGAGTCCCGCCCACCGC
ACCTGTCACCGAAGCCCCTACTTCTCCTCCCCCAGAGCATATGTGTAACTGTTCTGAGGTTGGAAGTTTG
GATGTAAAGCGCTGCAACCAGACCACAGGGCAGTGTGATTGTCATGTGGGTTATCAGGGTCTTCACTGTG
ACACCTGCAAAGAGGGCTTTTACCTGAATCACACTGTTGGTCTCTGCCTGCCATGTCACTGCAGTCCACA
TGGAGCTGTTAGCATCCTCTGTAACAGTTCTGGGAATTGCCAATGCAAAGTGGGTGTCACCGGCTCCATG
TGTGACAAATGCCAAGATGGACATTATGGCTTTGGTAAGACAGGCTGCTTGCCTTGCCAGTGCAACAACC
GGTCTGATAGTTGTGATGTTCACACAGGTGCTTGTCTAAACTGCCAGGAAAATAGTAAAGGGGAACACTG
TGAAGAATGCAAAGAAGGATTTTATCCGAGTCCTGATGCCGCAAAACAGTGCCATCGCTGCCCGTGTTCC
GCAGTGACTTCTACAGGCAATTGCACCATTGAATCTGGAGAGTTGGAGCCTACATGTGACCAATGTAAAG
ATGGTTACACAGGCCAGAACTGCAATAAATGTGAAAATGGCTATTACAATTCTGACAGCATCTGCACACA
GTGCGAATGTCATGGCCATGTGGACCCAATTAAAACTCCAAAGATTTGCAAGCCTGAGAGTGGTGAGTGC
ATCAACTGCCTTCATAACACCACTGGGTTCTGGTGCGAGAAATGCCTAGAAGGCTATGTTCGAGATCTTC
AGAGAAACTGCATCAAGCAAGAAGTTATTGTTCCAACTCCTGAAGGTTCTACCATTTTGGTTTCCAATGC
CTCTTTGACCACATCAGTGCCCACCCCTGTTATAAATAGTACTTTTGCCCCCACAACCCTGCAGACTATC
TTTGCAGTAAGCTCTTCTGAAAACAGCACCTCAGCTCTTGCTGATGTATCATGGACCCAGTTTAACATCA
TCATTTTGACAGTCATCATCATTGTGGTAGTGCTGCTAATGGGATTTGTAGGAGCTGTGTACATGTACCG
AGAGTACCAAAATCGGAAACTCAATGCTCCCTTTTGGACCATCGAGCTGAAAGAAGACAATATCAGTTTC
AGCAGCTACCATGACAGCATCCCCAATGCAGATGTGTCGGGATTGTTAGAGGACGATGCCAATGAAGTGG
CTCCCAATGGGCAGCTGACCCTGACAACACCTATTCATAACTACAAAGCCTGA

Translation (600 aa):
MNGGAERAMRSLPSLGGLALLCCAAAAAASTASAGNVTGGGGAEGQVVPSPSPGLRDQASSPFPKTAAPT
AQAPRTGPPRTTVRKTGATTPSAGSPEIIPPLRTSAQPAATPFPALDLSPATPSEDGHTPTTESPPSRPA
PTTLASTVGQPPTTSVVTTAQASSTPGTPTAESPDRSSNSSGVPPTAPVTEAPTSPPPEHMCNCSEVGSL
DVKRCNQTTGQCDCHVGYQGLHCDTCKEGFYLNHTVGLCLPCHCSPHGAVSILCNSSGNCQCKVGVTGSM
CDKCQDGHYGFGKTGCLPCQCNNRSDSCDVHTGACLNCQENSKGEHCEECKEGFYPSPDAAKQCHRCPCS
AVTSTGNCTIESGELEPTCDQCKDGYTGQNCNKCENGYYNSDSICTQCECHGHVDPIKTPKICKPESGEC
INCLHNTTGFWCEKCLEGYVRDLQRNCIKQEVIVPTPEGSTILVSNASLTTSVPTPVINSTFAPTTLQTI
FAVSSSENSTSALADVSWTQFNIIILTVIIIVVVLLMGFVGAVYMYREYQNRKLNAPFWTIELKEDNISF
SSYHDSIPNADVSGLLEDDANEVAPNGQLTLTTPIHNYKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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