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Report for CCDS16920.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16920.1 Public Mus musculus 2 Bpifb6 23 108 98 CCDS HistoryNCBI Gene:228796Re-query CCDS DB by CCDS ID:16920.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16920.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088955.11 ENSMUSP00000086347.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088955.11Link to Ensembl Protein Viewer:ENSMUSP00000086347.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000088955Re-query CCDS DB by Protein ID:ENSMUSP00000086347
Original member Current member NCBI NM_199303.2 NP_955007.2 Accepted alive Link to Nucleotide Sequence:NM_199303.2Link to Protein Sequence:NP_955007.2Re-query CCDS DB by Nucleotide ID:NM_199303Re-query CCDS DB by Protein ID:NP_955007Link to BLAST:NP_955007.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_955007.2 449 Q8BU51 449 100% 0 0

Chromosomal Locations for CCDS 16920.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 153902641 153902740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153902976 153903075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153903946 153904050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153904493 153904642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153904806 153904860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153905288 153905348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153905994 153906085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153906749 153906922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153908087 153908137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153908479 153908652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153909160 153909227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153910712 153910757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153911459 153911522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153911905 153911981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153912590 153912622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1350 nt):
ATGCTGTGTAGCCTGAGCCTGGTCCTCTGCGGCCTGCTGGCTGGCACTCGAGCTGACCCTGGGGGTCTTC
TGAGGTTGGGCATGGACATTATGAACCATGAGGTCCAGAGTGCCATGGAGGAGAGCCACATCCTGGAGAA
GATGGCAGCTGAGGCTAGCAATCCGCAGCCAGGGGGAAAGGCCATTAAAGGCCTCAGCAATATGAAGGTA
AAGGACGTCCTGGAGCCTGTTATCACATTGAACTTTGTACCTGGAGTGGGCATCTCCCAGTGTGTGTCCA
CAGGCATGACCATCACTGGCAAGAGTTTCACAGGAGGGAACATGGAAATCAACGTGGTCCTCAACATCAC
AGCTACTGATCGGCTTCTGCAAGATGAGGAGGCAGGCACCCCTGTGTTCAGGAGTGAGGGCTGTGAGGTC
ATCCTGGTCAGCGTGAAAACCAACCTGCCTAACAACAAAGCCATCAACAAGTTTGTGGACAGTACCCTGC
GCAAAGTCCTCCCTGGCCTGATGTGTCCAGCCATTGATGCTGTCCTGGAGTATGTGAACAAGAAATGGGC
CAAGTTGACTGACCCCATGCCCGTGGACAAGATGGGCACTGTCAAATATGCCCTGACATCCCCACCAGCC
ACTACAGCTAGCCACATCCAGGTGGACTTTAGTCCTGTGGTGCAGCTCCAGGAAGGCCAGCTTATCCAGC
TTGCCACTGATGGGTCACTCCCGGAGTTCCCCGAGGGCTCAGCCAAGGACTCACAACTGCTGCTCTCAGC
CACCTTCCTCACAGCTGAGCTGGCCCTTCTGCAGAAGTCCTTGGAAGTGAAACTCAAGGACAAGAGGGTT
GGTAAGCTTCCACAAAACACTAGGACACTGGCTGGCTTCATCCCGCAGGTGGCCAAGACATACCACAAAC
CAAAGCCTTTGCTGATCAAGGTCAAGATAAACAAACCCCCCAAGGTTACCATGAAGGCTGGAAAGAGCCT
GATGCACCTCCACGGTAGCTTGGAGATGTTCGCAGCGCGTAGACATGGCAAGCACCCGAAGTCACTCTTC
CGTCTGGAGACTCACATTGGACTGGAAATCCACTACTCCGTGCAGGATAACCGGCTGCAGATGGTCACCT
CTATGGACAGTTTATTGAGCCTGGCCCGGGAATCTTCTTCAGTTGGCGATTTCCACGAGGCGGAGTTAAC
TGGCTTCATCACTGATTATCTCCAGAAGGCCTACATCCCTGTGGTGAACGATGTACTCCATGTTGGGCTT
CCACTCCCAGACCTTCTGGCTATCAATTATAACCTGGCTGAGCTGGACATAGTAGAGGATGCCCTGGTGC
TGGGCTTGAAGACAGAATGA

Translation (449 aa):
MLCSLSLVLCGLLAGTRADPGGLLRLGMDIMNHEVQSAMEESHILEKMAAEASNPQPGGKAIKGLSNMKV
KDVLEPVITLNFVPGVGISQCVSTGMTITGKSFTGGNMEINVVLNITATDRLLQDEEAGTPVFRSEGCEV
ILVSVKTNLPNNKAINKFVDSTLRKVLPGLMCPAIDAVLEYVNKKWAKLTDPMPVDKMGTVKYALTSPPA
TTASHIQVDFSPVVQLQEGQLIQLATDGSLPEFPEGSAKDSQLLLSATFLTAELALLQKSLEVKLKDKRV
GKLPQNTRTLAGFIPQVAKTYHKPKPLLIKVKINKPPKVTMKAGKSLMHLHGSLEMFAARRHGKHPKSLF
RLETHIGLEIHYSVQDNRLQMVTSMDSLLSLARESSSVGDFHEAELTGFITDYLQKAYIPVVNDVLHVGL
PLPDLLAINYNLAELDIVEDALVLGLKTE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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