NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16870.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16870.1 Public Mus musculus 2 Sdcbp2 23 108 98 CCDS HistoryNCBI Gene:228765Re-query CCDS DB by CCDS ID:16870.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16870.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028950.8 ENSMUSP00000028950.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028950.8Link to Ensembl Protein Viewer:ENSMUSP00000028950.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000028950Re-query CCDS DB by Protein ID:ENSMUSP00000028950
Original member Current member NCBI NM_145535.2 NP_663510.1 Accepted alive Link to Nucleotide Sequence:NM_145535.2Link to Protein Sequence:NP_663510.1Re-query CCDS DB by Nucleotide ID:NM_145535Re-query CCDS DB by Protein ID:NP_663510Link to BLAST:NP_663510.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663510.1 292 Q99JZ0 292 100% 0 0

Chromosomal Locations for CCDS 16870.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 151582712 151582765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 151583934 151584003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 151584809 151584909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 151586327 151586485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 151587067 151587242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 151587322 151587493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 151589205 151589296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 151589533 151589587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (879 nt):
ATGTCTGTCCTGTATCCGTCTCTGGAGGATCTGAAGGTGGGCCAAGTCATCCAGGCCCAGGGCAGAGCCT
CACCCACGATGCCAACTCTGCCAGCCCCGATGGCTTCTGCACCCCCACTTTCAGAGTTGTATCCAAACCT
GGCAGAACTGGAAAGTTATATGGGACTGTCCCTCTCTAGCCAAGAAGTTCAGAAGAACCTGACTCAGATT
CCAGATAGTGACAATATGGTGGTCACTAGCCCTGGACCTGGCCAGGTGGTAGCTCCAGTATCTGGGAACA
ACCTGGGTATACTGCGTGCAGAGATCAAGCCTGGCGTGCGAGAGATCCACCTGTGCAAGGATGAACGTGG
CAAGACTGGACTTCGCCTGCAGGCTGTTGACAAGGGGCTCTTTGTGCAGCTGGTCCAGGCCAACACCCCT
GCATCCCTTGTGGGTTTGCGCTTTGGGGACCAGATCCTGCAAATTGATGGCTGTGACTGTGCTGGGTGGA
ACACACACAAAGCTCACAAGGTGTTGAAGAAGGCATCAGCGGAGAAGATTGTCATGGTTATTCGGGACAG
GCCATTCCAGAGGACTGTCACCATGCACAAAGACAGCTCAGGGCAAGTTGGCTTTTCCATCAAAAAGGGG
AAGATCGTGTCTGTGGTAAAGGGAAGCTCCGCCGCCCGCAATGGACTTCTAACCAACCACTATGTGTGTG
AGGTGAACGGACAGAACGTCATTGGGCTAAAGGACAAAAAGGTTACTGAGATTCTGACCACAGCTGGAGA
TGTCATCACACTGACCATTATTCCCACTGTGATCTACGAGCATATGATCAAAAGGTTGTCCCCGTTGCTG
CTTCACCACACCATGGACCACTCCATTCCAGACACCTGA

Translation (292 aa):
MSVLYPSLEDLKVGQVIQAQGRASPTMPTLPAPMASAPPLSELYPNLAELESYMGLSLSSQEVQKNLTQI
PDSDNMVVTSPGPGQVVAPVSGNNLGILRAEIKPGVREIHLCKDERGKTGLRLQAVDKGLFVQLVQANTP
ASLVGLRFGDQILQIDGCDCAGWNTHKAHKVLKKASAEKIVMVIRDRPFQRTVTMHKDSSGQVGFSIKKG
KIVSVVKGSSAARNGLLTNHYVCEVNGQNVIGLKDKKVTEILTTAGDVITLTIIPTVIYEHMIKRLSPLL
LHHTMDHSIPDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH