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Report for CCDS16708.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16708.1 Public Mus musculus 2 Mall 23 108 98 CCDS HistoryNCBI Gene:228576Re-query CCDS DB by CCDS ID:16708.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16708.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028856.2 ENSMUSP00000028856.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028856.2Link to Ensembl Protein Viewer:ENSMUSP00000028856.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000028856Re-query CCDS DB by Protein ID:ENSMUSP00000028856
Original member NCBI NM_145532.3 NP_663507.1 Updated not alive Link to Nucleotide Sequence:NM_145532.3Link to Protein Sequence:NP_663507.1Re-query CCDS DB by Nucleotide ID:NM_145532Re-query CCDS DB by Protein ID:NP_663507
Current member NCBI NM_145532.4 NP_663507.1 Accepted alive Link to Nucleotide Sequence:NM_145532.4Link to Protein Sequence:NP_663507.1Re-query CCDS DB by Nucleotide ID:NM_145532Re-query CCDS DB by Protein ID:NP_663507Link to BLAST:NP_663507.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663507.1 154 Q91X49 154 100% 0 0

Chromosomal Locations for CCDS 16708.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 127705861 127705923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127708837 127708959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127712269 127712436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127729756 127729866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (465 nt):
ATGGCCTCCCGGGACACACCGCCGGCCACCAGCTACGCCCCGCCTGACGTGCCCTCGGGGGTCGCCGCCT
TGTTCCTCACCATCCCCTTTGCCTTCTTCCTACCGGAGCTGGTGTTCGGGTTCTGGGTGTGGACTCTGGT
GGCTGCTACACACGTCGCATACCCCTTGCTGCAGGGATGGGTGCTGTATGTCTCCCTCACCTCCTTTCTC
ATCTCCTTGATGTTCCTGATGTCCTACTTGTTTGGGTTTTACAAACGATTTGAGTCCTGGAGAGTCCTGG
ACAGCCTGTACCATGGCACCACAGGCATTCTGTACATGAGTGCCTCTGTCCTGCAAGCATATGCCACCAT
CATTTCTGAGGGCCACAACCTGAGCCACTACTACATCAATGTTGCAGCCTCGTTCTTCGCCTTCCTCACT
ACACTGCTCTATATCCTGCACGCTTTCAGCATCTATTACCACTGA

Translation (154 aa):
MASRDTPPATSYAPPDVPSGVAALFLTIPFAFFLPELVFGFWVWTLVAATHVAYPLLQGWVLYVSLTSFL
ISLMFLMSYLFGFYKRFESWRVLDSLYHGTTGILYMSASVLQAYATIISEGHNLSHYYINVAASFFAFLT
TLLYILHAFSIYYH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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