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Report for CCDS15257.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15257.1 Public Mus musculus 1 Zp3r 23 108 98 CCDS HistoryNCBI Gene:22789Re-query CCDS DB by CCDS ID:15257.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15257.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039862.10 ENSMUSP00000045443.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039862.10Link to Ensembl Protein Viewer:ENSMUSP00000045443.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000039862Re-query CCDS DB by Protein ID:ENSMUSP00000045443
Original member NCBI NM_009581.2 NP_033607.2 Updated not alive Link to Nucleotide Sequence:NM_009581.2Link to Protein Sequence:NP_033607.2Re-query CCDS DB by Nucleotide ID:NM_009581Re-query CCDS DB by Protein ID:NP_033607
Current member NCBI NM_009581.3 NP_033607.2 Accepted alive Link to Nucleotide Sequence:NM_009581.3Link to Protein Sequence:NP_033607.2Re-query CCDS DB by Nucleotide ID:NM_009581Re-query CCDS DB by Protein ID:NP_033607Link to BLAST:NP_033607.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033607.2 579 Q60736 579 99.6546% 0 2

Chromosomal Locations for CCDS 15257.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 130576919 130577125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130577886 130578088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130582849 130582938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130583400 130583600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130591364 130591561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130596659 130596841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130598807 130599001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130599160 130599245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130615159 130615258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130618295 130618477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130619344 130619437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1740 nt):
ATGATAACCTGGTCCTTCATTGAGCTGTGGAGAACCTCTCATTCAACTCTGTTCCAAATGACCTTGGCCA
CTGTTCTGATGGCTCCTGTTCTTGGTGATTGTGGACCTCCACCCCTTTTACCGTTTGCTTCTCCAACCAA
CCAGTTGTATGAGTCAACAACCTTCCCATCTGGAACTGTCCTGAAATATACCTGCCATCACGGCTTCAAG
AGAGTCAATTCAAGCCATCTTTCTTGTGATGAGAATGGTTCATGGGTCTATAGTACCTTTTGTGCCAGGA
AACGATGCAAGAACCCAGGCGAGTTGGTCAATGGGAAAGTAGAAATTCCATCTGACCTTTTGGTAGGCTC
AATCATAGAGTTCAGCTGCTCAAAGGGCTATCTTCTGATTGGCTCAGCAACTAGTCGGTGTGAGGTCCAA
GGTAAAGGAGTTGACTGGAGTGATTCTCTCCCAGAATGTGTAATTGCCACGTGTGAGCCCCCTCCACCCA
TCAGCAATGGGAAGCACAGTGGGAGAGATGATGACCTGTACACGTTTGGCTCTGTAGTCATCTACAATTG
TGATCCCACCTTCACACTCCTTGGCAATGCCTCCATTGTCTGCACTGTGGTGAACAGGACAGTAGGTGTT
TGGAGACCACACCCTCCTGCCTGTCAAAAAATCGTCTGCCATCGGCCGCAGATTCTGAAGGGATACTTGG
CCCCTGGATTTCGACAGTTCTATGCGTACAGAGACGCTCTTGAGATCCGATGCAAGAAGGGTTTTATCCT
CAGAGGCAGCAGTGTGATCCACTGTGAAGCAAATGGCGAGTGGTTTCCTTCTATCCCCACCTGTGAACCC
AATGGTTGTACCAATATACCAGATATTTCCTATGCTTCCTGGGAGGGATATAAGTTTCCATTAAGAAATT
TTGAAGTATTTGAAATTGGGGCCAAATTGAAATACCAGTGCAAGCCTGGTTATCGAGCAAGTCTTAACGA
TCCCCAGACTGTGACTTGTCAGGAAAATCTGACTTGGTCATCTACTAATGGATGTGAAAGGATATGTTGC
CCAACACCAGATATGGAGAAAATCAAAATTGTGAGTGAAAGGAGAGATTTCACTGGCACATGCATCTATG
CCTACGGAGACTATGTTTTCTACATTTGTAATGAAGGCTCTTACCCTATGTCTACGGATGGAAGGAGTTC
ATGTCAAGCAGATGGAAAGTGGGACCCCGCAATACCATCATGTCAGGCAGACTCAGGCCTGCAAAACCGT
CTTGCTCTTTTCACCTTCCCAAACATATCAGAAACCAATGTGACAAACAAAACCTATCTATTTGGTCATG
AAGAAAACTCAACCGAGCATGCCATGAAAGGTGTGTGTCTCAAACCAATGGTCATAAATGGAAACCTGTC
TGTGGAGAGAGTTATCTATGCTGAACTGGAAAATATCACCATTCAATGTGATCCTGGATATACCATAGTT
GGTTCACCAAACATCATTTGTTCAAACAGAACGTGGTACCCTGAGGTACCCAGCTGTCAGATGGAGGTCC
TAGAAGACTGCAGAATAGTGAGCAGAGGCGCACAACTCTTGCATTGCCTCTCAAGCCCAGAAGATGTGCA
CAGGGCCCTGAAGGTGTACAAGCTGTTTCTAGAGATCGAACGATTGGAACATCAGAAAGAGAAGTGGATA
CAGTTACACAGGAAACCTCAGTCTATGAAAATTAATAGGTCATTTAGACTTTGCAATTAG

Translation (579 aa):
MITWSFIELWRTSHSTLFQMTLATVLMAPVLGDCGPPPLLPFASPTNQLYESTTFPSGTVLKYTCHHGFK
RVNSSHLSCDENGSWVYSTFCARKRCKNPGELVNGKVEIPSDLLVGSIIEFSCSKGYLLIGSATSRCEVQ
GKGVDWSDSLPECVIATCEPPPPISNGKHSGRDDDLYTFGSVVIYNCDPTFTLLGNASIVCTVVNRTVGV
WRPHPPACQKIVCHRPQILKGYLAPGFRQFYAYRDALEIRCKKGFILRGSSVIHCEANGEWFPSIPTCEP
NGCTNIPDISYASWEGYKFPLRNFEVFEIGAKLKYQCKPGYRASLNDPQTVTCQENLTWSSTNGCERICC
PTPDMEKIKIVSERRDFTGTCIYAYGDYVFYICNEGSYPMSTDGRSSCQADGKWDPAIPSCQADSGLQNR
LALFTFPNISETNVTNKTYLFGHEENSTEHAMKGVCLKPMVINGNLSVERVIYAELENITIQCDPGYTIV
GSPNIICSNRTWYPEVPSCQMEVLEDCRIVSRGAQLLHCLSSPEDVHRALKVYKLFLEIERLEHQKEKWI
QLHRKPQSMKINRSFRLCN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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