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Report for CCDS15934.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15934.1 Public Mus musculus 2 Niban2 23 108 98 CCDS HistoryNCBI Gene:227737Re-query CCDS DB by CCDS ID:15934.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15934.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028135.14 ENSMUSP00000028135.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028135.14Link to Ensembl Protein Viewer:ENSMUSP00000028135.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000028135Re-query CCDS DB by Protein ID:ENSMUSP00000028135
Original member Current member NCBI NM_146119.2 NP_666231.1 Accepted alive Link to Nucleotide Sequence:NM_146119.2Link to Protein Sequence:NP_666231.1Re-query CCDS DB by Nucleotide ID:NM_146119Re-query CCDS DB by Protein ID:NP_666231Link to BLAST:NP_666231.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666231.1 749 Q8R1F1 749 100% 0 0

Chromosomal Locations for CCDS 15934.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 32876350 32876404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32905769 32905899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32909849 32909977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32911341 32911446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32912420 32912587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32918993 32919108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32919496 32919600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32919703 32919865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32920953 32921140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32922069 32922224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32922558 32922674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32922856 32922963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32923047 32923158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32923431 32924026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2250 nt):
ATGGGAGACGTACTGTCCACACACCTGGATGACGCACGGCGCCAGCACATCGCAGAGAAAACCGAGAAGA
TCCTCACAGAGTTCCTTCGCTTCTATGAGGACCAGTATGGTGTCTCCCTCTTCAATAGCATGCGCCATGA
GATCGAGGGCACCGGGCCACCGCAGGCACAGCTGCTCTGGCGCAAGGTGCCCCTGGATGAACGCATCATC
TTCTCCGGAAACCTTTTCCAGTACCAGGAAGACAATAAGAAGTGGAGAAACCGCTTCAGCCTGGTGCCCC
ATAACTATGGGCTGGTGCTATATGAGAACAAAGTGGCCTATGAGCGGCAGATACCACCCCGGGCCGTCAT
CAACAGCGCGGGCTACAAGGTTCTCACCTCTGTCGACCAGTATCTGGAGCTGGTCGGCAATTCCCTGCCA
GGGACCACATCGAAATCAGGCTCCACCCCCATCCTTAAGTGCCCAACGCAGTTCCCTCTCATCCTGTGGC
ATCCTTACGCCCGACACTATTACTTCTGCATGATGACAGAAGCGGAGCAGGACAAGTGGCAGGCAGTGCT
TCAGGATTGCGTTCGACACTGCAACAACGGGATCCCGGAGAACTCAAAGGTGGAGGGCCCTGCATTCACA
GACGCCATCCGCATGTACCGCCAGTCAAAGGAGCAGTACGGCACCTGGGAAATGCTGTGTGGCAACGAGG
TGCAGATCCTAAGCAACCTGGTGATGGAGGAGCTGGGCCCAGCGCTGAAGGCAGAGCTTGGCCCACGGCT
GAAGGGAAAGCCTCAGGAGCGGCAGCGACAGTGGATCCAGATCTCGGACGCTGTGTACCGCCTGGTATTT
GAACAGGCCAAGGTGCACTTTGAGGACGTGCTGTGTAAGCTGCAGCGGGCCCGGCCGGCCATGGAGGCAG
TCATCCGCACCGACATGGACCAGATCATCACCTCCAAGGAGCATCTGGCCAGCAAGATCCGAGCCTTCAT
CCTCCCCAAGGCGGAGGTGTGCGTGAGGAACCACGTCCAGCCCTACATCCCATCCATCTTGGAGGCTCTG
ATGGTGCCCACCAGCCAGGGCTTCACCGAGGTGCGGGATGTCTTCTTCAAAGAGGTCACAGACATGAATC
TGAACGTGATCAACGAGGGTGGCATTGACAAGCTGGGCGAGTACATGGAGAAGCTATCCCAGCTGGCATA
CCACCCCCTGAAGATGCAGAGCTGCTATGAGAAGATGGAGCCACTGCGGCTCGACGGGCTGCAGCAGCGA
TTCGACGTGTCTAGCACTTCCGTGTTCAAGCAGCGAGCCCAGATCCACATGCGAGAGCAAATGGACAATG
CTGTGTACACCTTCGAAACCCTCCTGCACCAAGAGCTGGGGAAGGGACCCACCAAGGAGGAGCTGTGCAA
ATCCATCCAGCGGATTCTAGAGCGCGTGCTGAAGAAATACGACTATGACAGCAGTTCTGTGCGCAAGAGA
TTCTTCCGAGAGGCGCTGCTGCAGATCACCATTCCCTTCCTGCTCAAAAAGCTGGCCCCCACCTGCAAGT
CGGAGCTGCCACGCTTCCAGGAGCTGATCTTTGAAGACTTTGCCAGGTTCATCCTGGTGGAGAACACGTA
CGAGGAGGTGGTGCTGCAGACGGTCATGAAGGACATCCTGCAGGCTGTGAAGGAGGCCGCAGTGCAGCGC
AAACACAACCTCTACCGTGACAGCATGGTTCTGCACAATAGTGACCCCAATCTACACCTGCTGGCTGAGG
GCACACCAATCGACTGGGGCGAACAGTACGGTGACAGCGGTGACAGCGGCGGTGGTGACAGTGGTGGCAG
CCCCTGCCCCTCTGAAGCAGCCACCCTCACAGAAAAGCGCAGGCGTGCCAAGCAGGTGATGTCCGTGGTC
CAGGACGAGGAGTCGGGGCTGCCCTTTGAGGCTGGCGTTGAACCGCCATCACCTGCATCCCCGGACAGTG
TCACCGAGCTCCGAGGCCTGTTGGCCCAGGACCTGCAGGCTGAAAGCTCCCCACCAGCCAGCCCTCTTCT
CAATGGGGCTCCAGTCCAAGAGAGCTCCCAACCCGTGGCAGTCCCAGAGGCCTCACCGCCAGCCTCACCC
CTCCGGCATCTCCCACCTGGAAAGGCTGTGGACCTTGAGCCCCCTAAGCCCAGTGACCAAGAGACCGGAG
AGCAGGTGTCTAGCCCCGGTAGCCGTCCCCCCATCCATACCACCACTGAGGACAGTGCGGGAGTGCAGAC
GGAGTTCTAA

Translation (749 aa):
MGDVLSTHLDDARRQHIAEKTEKILTEFLRFYEDQYGVSLFNSMRHEIEGTGPPQAQLLWRKVPLDERII
FSGNLFQYQEDNKKWRNRFSLVPHNYGLVLYENKVAYERQIPPRAVINSAGYKVLTSVDQYLELVGNSLP
GTTSKSGSTPILKCPTQFPLILWHPYARHYYFCMMTEAEQDKWQAVLQDCVRHCNNGIPENSKVEGPAFT
DAIRMYRQSKEQYGTWEMLCGNEVQILSNLVMEELGPALKAELGPRLKGKPQERQRQWIQISDAVYRLVF
EQAKVHFEDVLCKLQRARPAMEAVIRTDMDQIITSKEHLASKIRAFILPKAEVCVRNHVQPYIPSILEAL
MVPTSQGFTEVRDVFFKEVTDMNLNVINEGGIDKLGEYMEKLSQLAYHPLKMQSCYEKMEPLRLDGLQQR
FDVSSTSVFKQRAQIHMREQMDNAVYTFETLLHQELGKGPTKEELCKSIQRILERVLKKYDYDSSSVRKR
FFREALLQITIPFLLKKLAPTCKSELPRFQELIFEDFARFILVENTYEEVVLQTVMKDILQAVKEAAVQR
KHNLYRDSMVLHNSDPNLHLLAEGTPIDWGEQYGDSGDSGGGDSGGSPCPSEAATLTEKRRRAKQVMSVV
QDEESGLPFEAGVEPPSPASPDSVTELRGLLAQDLQAESSPPASPLLNGAPVQESSQPVAVPEASPPASP
LRHLPPGKAVDLEPPKPSDQETGEQVSSPGSRPPIHTTTEDSAGVQTEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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