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Report for CCDS35675.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35675.1 Public Mus musculus 1 Slco4c1 23 108 98 CCDS HistoryNCBI Gene:227394Re-query CCDS DB by CCDS ID:35675.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 35675.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071985.5 ENSMUSP00000071875.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071985.5Link to Ensembl Protein Viewer:ENSMUSP00000071875.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000071985Re-query CCDS DB by Protein ID:ENSMUSP00000071875
Original member Current member NCBI NM_172658.3 NP_766246.1 Accepted alive Link to Nucleotide Sequence:NM_172658.3Link to Protein Sequence:NP_766246.1Re-query CCDS DB by Nucleotide ID:NM_172658Re-query CCDS DB by Protein ID:NP_766246Link to BLAST:NP_766246.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766246.1 722 Q8BGD4 722 100% 0 0

Chromosomal Locations for CCDS 35675.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 96818947 96819107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 96821183 96821320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 96823697 96823761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 96828791 96828975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 96831986 96832139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 96836880 96837075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 96837454 96837598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 96839167 96839285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 96841130 96841251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 96842454 96842550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 96844476 96844655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 96867725 96867988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 96871767 96872109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2169 nt):
ATGCAGGGCTCCAAAGGAATAGAGAACCCGGCTTTCGTCCCTTCCAGCCCAGGCACCCCACGCCGTGCGT
CTGCTTCGCCCTCCCAGGTGGAGGTCTCTGCTGTGGCCTCCAGGAATCAGAATGGGGGTTCGCAGCCTCG
GGAATCTGAGGAGCCTCAGAAGTCAACTGAGCCATCCCCGCCTTCTTCGAATCCCCCAGCTTCTGATGAG
CCGCCGGGGTCACAGCTAAGCGAGCTTGAGGAGGGACCTTGCGGGTGGAGGGGCTTTCACCCCCAGTGTC
TCCAGCGCTGCAACACCCCCCAAGGCTTTTTGCTTCACTACTGTCTCTTAGCCCTAACGCAAGGTATTGT
AGTAAACGGCCTGGTAAACATTAGCATCTCCACCATTGAGAAGCGTTATGAAATGAAAAGCTCACTGACA
GGCCTGATATCATCGAGCTACGACATCTCCTTTTGTGTGTTATCTCTATTTGTGTCTTTCTTTGGGGAGA
GAGGACACAAACCTCGCTGGCTCGCCTTTGCATCCTTTATGATAGGCCTGGGAGCGCTGGTGTTTTCCTT
ACCACACTTCTTCAGTGGAAGATATGAACTGGGATCCATTTTTGAAGATACGTGCTTAACAAGGAACAGT
ACCAGATGTTCATCTTCAACCTCCCTGCTTTCTAACTACTTCTATGTCTTTGTCCTGGGACAATTGTTGC
TGGGGACCGGAGGGACTCCGCTCTACACCCTGGGGACAGCCTTTATTGATGACTCTGTGCCCACACACAA
ATCTTCTCTCTATATAGGTATTGGCTATTCTATGTCAATCCTAGGCCCTGCCATTGGATATGTGTTGGGT
GGACAGCTGTTGACAATGTACATTGATATTGCTATGGGACAAAGTTCGGATCTGACTGAGGATGATCCCC
GGTGGCTGGGGGCTTGGTGGATTGGATTCCTTTTAGCTTGGCTCTTTGCTTGGTCTTTGATAATGCCTTT
CTCCTGTTTTCCCAAGCATTTACCAGGGACAGCAAAAATTCAAGCTGGCAAAACTTCCCAGACTCATCAA
AATAATAGTACTTCCTTCCAACATACGGATGAAAATTTTGGAAAAAGTATTAAAGATTTTCCAACTGCTG
TAAAGAATTTGATGAGGAATACAGTCTTTATATGTTTAGTTCTATCAACTACTTCTGAAGCATTAATTAC
TACGGGATTTGCCACATTTTTACCTAAATTTATAGAAAATCAATTTGGATTGACATCGAGCTTTGCAGCC
ACTCTTGGAGGGGCTGTTTTAATTCCTGGAGCTGCTCTTGGTCAAATCTTAGGTGGTGTTCTTGTTTCAA
AATTCAAAATGAAGTGTAAAAATACAATGAAGTTTGCCTTATGTACATCTGGAGTAGCACTTGTGCTGAG
TTTTGTATTTATTTATGCAAAATGTGAAAATGAGCCATTTGCTGGTGTGTCTGAATCATATAATGGAACT
GGAGAAATGGGGAATTTGACTGCACCTTGTAATGCCAACTGCAACTGTTTGCGGTCCTACTATTACCCAC
TCTGTGGAAGTGATGGAATCCAGTATTTTTCTCCCTGCTTTGCAGGTTGTTTAAACTCAGTTTCAAACAG
GAAACCCAAGGTATATTATAATTGTTCCTGTATAGAAAGGAAAATCACTTCTACTGCAGAAAGTACTGAT
TTTGAAGCTAAAGCTGGAAAATGTAGAACTCGGTGTTCAAACTTGCCCATATTTCTTGGCATTTTCTTCA
TTACAGTTATCTTTACCTTTATGGCAGGCACTCCTATAACTGTGTCTATATTAAGGTGTGTTAATCACAG
ACATCGGTCTCTAGCATTGGGAGTGCAGTTCATGCTTCTTCGATTGCTAGGTACAATACCTGGGCCAATT
ATATTTGGTGTCATAATAGACAGCACATGTGTTCTGTGGGATGTCAATGAATGTGGAATAAAAGGAGCAT
GTTGGATTTATGATAACATCAAGATGGCACATATGCTGGTAGCTATAAGTGTTACTTGTAAAGTTATCAC
CATATTCTTCAATGGACTTGCGATTGTTCTCTATAAACCACCGCCCCCAGGAACAGAGGTATCATTTCAA
AGTCAGAATGTCATTGTGTCTACTATTTCGGTCGAAGAGGATCTAGACAAAGCAGAAAATGAAGGGTGA

Translation (722 aa):
MQGSKGIENPAFVPSSPGTPRRASASPSQVEVSAVASRNQNGGSQPRESEEPQKSTEPSPPSSNPPASDE
PPGSQLSELEEGPCGWRGFHPQCLQRCNTPQGFLLHYCLLALTQGIVVNGLVNISISTIEKRYEMKSSLT
GLISSSYDISFCVLSLFVSFFGERGHKPRWLAFASFMIGLGALVFSLPHFFSGRYELGSIFEDTCLTRNS
TRCSSSTSLLSNYFYVFVLGQLLLGTGGTPLYTLGTAFIDDSVPTHKSSLYIGIGYSMSILGPAIGYVLG
GQLLTMYIDIAMGQSSDLTEDDPRWLGAWWIGFLLAWLFAWSLIMPFSCFPKHLPGTAKIQAGKTSQTHQ
NNSTSFQHTDENFGKSIKDFPTAVKNLMRNTVFICLVLSTTSEALITTGFATFLPKFIENQFGLTSSFAA
TLGGAVLIPGAALGQILGGVLVSKFKMKCKNTMKFALCTSGVALVLSFVFIYAKCENEPFAGVSESYNGT
GEMGNLTAPCNANCNCLRSYYYPLCGSDGIQYFSPCFAGCLNSVSNRKPKVYYNCSCIERKITSTAESTD
FEAKAGKCRTRCSNLPIFLGIFFITVIFTFMAGTPITVSILRCVNHRHRSLALGVQFMLLRLLGTIPGPI
IFGVIIDSTCVLWDVNECGIKGACWIYDNIKMAHMLVAISVTCKVITIFFNGLAIVLYKPPPPGTEVSFQ
SQNVIVSTISVEEDLDKAENEG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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