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Report for CCDS35817.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35817.1 Public Mus musculus 1 Mark1 23 108 98 CCDS HistoryNCBI Gene:226778Re-query CCDS DB by CCDS ID:35817.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35817.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027929.9 ENSMUSP00000027929.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027929.9Link to Ensembl Protein Viewer:ENSMUSP00000027929.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000027929Re-query CCDS DB by Protein ID:ENSMUSP00000027929
Original member Current member NCBI NM_145515.2 NP_663490.2 Accepted alive Link to Nucleotide Sequence:NM_145515.2Link to Protein Sequence:NP_663490.2Re-query CCDS DB by Nucleotide ID:NM_145515Re-query CCDS DB by Protein ID:NP_663490Link to BLAST:NP_663490.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663490.2 795 Q8VHJ5 795 100% 0 0

Chromosomal Locations for CCDS 35817.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 184898524 184898878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 184900809 184900853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 184905403 184905654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 184907083 184907247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 184908329 184908429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 184911996 184912189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 184912482 184912635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 184914517 184914629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 184916079 184916178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 184919310 184919429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 184919518 184919754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 184921552 184921608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 184925816 184925886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 184928034 184928099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 184929322 184929370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 184943206 184943259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 184944797 184945000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 184999422 184999472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2388 nt):
ATGTCGGCGCGGACGCCATTGCCCACGGTGAACGAGCGGGACACGGAGAACCATACGTCTGTGGATGGCT
ACACTGAAACACATATCCCGCCTGCCAAGTCAAGTAGCAGACAGAACCTTCCCCGGTGTAGAAACTCCAT
TACGTCAGCGACAGATGAACAGCCTCACATCGGAAATTACCGCTTACAGAAAACAATAGGGAAAGGAAAT
TTTGCCAAAGTGAAATTGGCAAGACATGTTCTAACAGGTAGAGAGGTCGCTGTGAAAATAATAGACAAAA
CTCAGCTAAACCCTACCAGTCTACAGAAGTTGTTCCGAGAAGTACGAATAATGAAGATACTGAACCATCC
TAACATAGTGAAACTGTTTGAAGTTATTGAAACAGAGAAGACACTCTATTTGGTCATGGAATACGCAAGT
GGGGGTGAAGTCTTTGATTACTTAGTTGCCCACGGAAGAATGAAAGAGAAAGAGGCCCGTGCCAAATTCA
GGCAGATTGTATCTGCTGTACAGTATTGCCATCAAAAATGCATTGTTCACCGTGATCTTAAGGCTGAAAA
CCTTCTCCTTGATGCTGATATGAATATTAAAATTGCTGACTTTGGTTTTAGCAATGAATTCACAGTGGGG
AACAAATTGGACACATTCTGTGGAAGCCCGCCTTATGCTGCCCCCGAGCTTTTCCAAGGCAAGAAGTACG
ATGGGCCAGAAGTGGATGTGTGGAGTCTGGGCGTCATTCTCTACACGCTGGTCAGTGGCTCGCTGCCGTT
TGATGGCCAGAATCTAAAGGAACTTCGGGAGCGAGTCCTTCGAGGGAAGTACCGCATCCCCTTCTACATG
TCCACAGACTGTGAGAATCTCCTGAAGAAACTGTTAGTGCTGAATCCCATAAAGCGGGGCAGCCTGGAGC
AAATAATGAAAGACCGATGGATGAATGTTGGTCATGAGGAAGAAGAGCTAAAGCCGTACTCTGAGCCTGA
GCTTGATCTCAGCGATGCAAAAAGAATAGACATTATGGTCACCATGGGTTTTGCACGAGATGAAATCAAT
GATGCCTTAGTAAGTCAGAAATATGATGAAGTTATGGCTACTTACATCCTTCTAGGTAGAAAACCACCCG
AGTTCGAAGGTGGTGAGTCACTGTCCAGTGGGAGCTTGTGCCAGCGGTCGCGGCCGAGCAGCGACCTGAA
CAACAGCACCCTTCAGTCGCCTGCTCACCTGAAGGTCCAGCGGAGCATCTCGGCCAACCAGAAGCAGAGG
CGCTTCAGCGACCACGCCGGCCCCTCCATCCCCCCTGCCGTCTCATACACCAAGAGGCCTCAGGCCAACA
GCGTGGAGAGTGAACAGAAGGAGGAGTGGGGCAAAGACACAGCCCGCAGACTTGGCAGCACCACAGTGGG
ATCAAAGAGCGAAGTCACAGCCAGCCCCTTGGTGGGGCCAGACAGGAAAAAGTCCACAGCGAGCCCAAGT
AACAACGTATATTCTGGCGGTAGCATGGCGAGGAGGAATACGTATGTGTGTGAGAGGAGCACAGACCGGT
ACGCAGCCTTGCAGAATGGAAGAGACAGCAGCCTTACAGAGATGTCTGCCAGCAGCATGTCCTCGGCGGG
CTCCACCGTGGCCTCTGCTGGCCCCTCAGCACGTCCCCGCCACCAGAAATCTATGTCAACCTCTGGCCAC
CCTATAAAAGTTACACTGCCAACCATTAAAGATGGCTCAGAAGCGTATCGGCCTGGTGCAGCTCAGAGAG
TGCCTGCTGCTTCTCCGTCTGCTCACAGCATCAGTGCCAGCACTCCAGACAGGACCCGCTTCCCCCGAGG
GAGCTCCAGCCGAAGCACTTTCCATGGGGAACAGCTCCGAGAGCGGCGCAGCGCGGCTTACAACGGACCA
CCGGCCTCCCCATCCCACGAAACGGGTGCGTTTGCACATGCCAGAAGGGGCACGTCAACCGGCATCATCA
GCAAAATCACCTCCAAGTTCGTCCGCAGGGATCCAAGTGAAGGCGAAGCCAGCGGCAGAGCCGACACAGC
CAGAGGTTCATCGGGAGATCCCAAAGAGAGAGACAAGGACGAGGGCAAAGAGGCCAAGCCCCGCTCCCTG
CGCTTCACCTGGAGCATGAAGACCACGAGCTCCATGGACCCCAACGACATGCTGAGGGAGATCCGCAAGG
TGCTGGATGCCAACACCTGTGACTATGAGCAGAAAGAGAGGTTCCTGCTCTTCTGCGTTCACGGAGACGC
TCGGCAGGACAGCCTCGTACAGTGGGAGATGGAGGTCTGCAAGTTGCCTCGGCTCTCACTCAACGGGGTC
CGCTTCAAGCGAATATCTGGGACATCTATTGCCTTTAAGAACATTGCATCCAAAATAGCAAATGAGCTTA
AGCTGTAA

Translation (795 aa):
MSARTPLPTVNERDTENHTSVDGYTETHIPPAKSSSRQNLPRCRNSITSATDEQPHIGNYRLQKTIGKGN
FAKVKLARHVLTGREVAVKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLVMEYAS
GGEVFDYLVAHGRMKEKEARAKFRQIVSAVQYCHQKCIVHRDLKAENLLLDADMNIKIADFGFSNEFTVG
NKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYM
STDCENLLKKLLVLNPIKRGSLEQIMKDRWMNVGHEEEELKPYSEPELDLSDAKRIDIMVTMGFARDEIN
DALVSQKYDEVMATYILLGRKPPEFEGGESLSSGSLCQRSRPSSDLNNSTLQSPAHLKVQRSISANQKQR
RFSDHAGPSIPPAVSYTKRPQANSVESEQKEEWGKDTARRLGSTTVGSKSEVTASPLVGPDRKKSTASPS
NNVYSGGSMARRNTYVCERSTDRYAALQNGRDSSLTEMSASSMSSAGSTVASAGPSARPRHQKSMSTSGH
PIKVTLPTIKDGSEAYRPGAAQRVPAASPSAHSISASTPDRTRFPRGSSSRSTFHGEQLRERRSAAYNGP
PASPSHETGAFAHARRGTSTGIISKITSKFVRRDPSEGEASGRADTARGSSGDPKERDKDEGKEAKPRSL
RFTWSMKTTSSMDPNDMLREIRKVLDANTCDYEQKERFLLFCVHGDARQDSLVQWEMEVCKLPRLSLNGV
RFKRISGTSIAFKNIASKIANELKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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