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Report for CCDS28130.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28130.1 Public Mus musculus 16 Zfp148 23 108 98 CCDS HistoryNCBI Gene:22661Re-query CCDS DB by CCDS ID:28130.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28130.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089677.6 ENSMUSP00000087106.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089677.6Link to Ensembl Protein Viewer:ENSMUSP00000087106.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000089677Re-query CCDS DB by Protein ID:ENSMUSP00000087106
Original member Current member EBI ENSMUST00000165418.8 ENSMUSP00000126338.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165418.8Link to Ensembl Protein Viewer:ENSMUSP00000126338.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165418Re-query CCDS DB by Protein ID:ENSMUSP00000126338
Original member Current member NCBI NM_001358569.1 NP_001345498.1 Accepted alive Link to Nucleotide Sequence:NM_001358569.1Link to Protein Sequence:NP_001345498.1Re-query CCDS DB by Nucleotide ID:NM_001358569Re-query CCDS DB by Protein ID:NP_001345498Link to BLAST:NP_001345498.1
Original member Current member NCBI NM_001358570.1 NP_001345499.1 Accepted alive Link to Nucleotide Sequence:NM_001358570.1Link to Protein Sequence:NP_001345499.1Re-query CCDS DB by Nucleotide ID:NM_001358570Re-query CCDS DB by Protein ID:NP_001345499Link to BLAST:NP_001345499.1
Original member Current member NCBI NM_011749.4 NP_035879.1 Accepted alive Link to Nucleotide Sequence:NM_011749.4Link to Protein Sequence:NP_035879.1Re-query CCDS DB by Nucleotide ID:NM_011749Re-query CCDS DB by Protein ID:NP_035879Link to BLAST:NP_035879.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345498.1 794 Q61624 794 100% 0 0
NP_001345499.1 794 Q61624 794 100% 0 0
NP_035879.1 794 Q61624 794 100% 0 0

Chromosomal Locations for CCDS 28130.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 33434642 33434974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33456876 33457001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33466855 33466978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33468100 33468183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33495345 33495463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33495746 33497344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2385 nt):
ATGAACATTGACGACAAACTGGAAGGATTGTTTCTTAAATGTGGCGGCATAGACGAAATGCAGTCTTCCA
GGGCAATGGTTGTAATGGGTGGAGTGTCTGGCCAGTCCGCCGTGTCTGGAGAACTGCAGGAGTCAGTACT
TCAAGATCGAAGTTTGCCTCACCAGGAGATCCTTGCTGCAGACGAAGTGTTACAAGAGAGTGAAATGAGA
CAACAGGATATGATATCCCATGATGAACTCATGGTCCACGAGGAGACAGTGAAAAATGACGAAGAGCAGA
TGGACACCCACGAGCGGCTTCCCCAAGGACTGCAGTATGCACTCAATGTCCCTATAAGTGTAAAGCAGGA
AATTACTTTTACTGATGTATCTGAGCAACTGATGAGAGACAAAAAACAAGTCAGAGAGCCAGTAGACTTA
CAGAAAAAGAAGAAGCGGAAACAACGCTCTCCTGCAAAAATCCTTACAATAAATGAGGATGGATCACTTG
GTTTGAAAACCCCTAAATCTCACGTTTGTGAGCACTGCAATGCTGCCTTTAGAACGAACTATCACTTACA
GAGGCATGTCTTCATTCATACAGGCGAAAAACCGTTTCAATGTAGTCAATGTGACATGCGTTTCATACAG
AAGTACCTGCTTCAGAGACACGAGAAGATCCATACCGGTGAAAAACCATTTCGCTGTGATGAATGTGGTA
TGAGATTCATACAGAAATATCACATGGAAAGGCACAAAAGAACTCACAGTGGAGAGAAGCCTTATCAGTG
TGAATACTGCTTACAGTATTTTTCCAGAACAGATCGTGTATTGAAACATAAACGTATGTGCCATGAAAAT
CACGACAAAAAACTAAACAGATGTGCCATCAAAGGTGGCCTTCTGACATCAGAGGAAGATTCTGGCTTTT
CTACATCACCAAAAGATAATTCACTGCCAAAAAAGAAAAGGCAAAAAACTGAGAAGAAATCGTCTGGGAT
GGACAAGGAGAGTGTGCTGGACAAATCTGACCTGAAGAAAGACAAGAACGATTACCTGCCTCTCTACTCG
TCGAGCACTAAAGTAAAGGATGAGTACATGGTGGCAGAGTATGCTGTTGAGATGCCACACTCATCAGTGG
GAGGCTCTCACCTAGAAGATGCATCTGGAGAAATACACCCACCCAAGTTGGTTCTCAAAAAAATCAATAG
TAAGAGAAGTCTGAAGCAGCCCTTGGAGCAAAGTCAAACCATTTCACCCCTATCCAGCTATGAAGACAGC
AAAGTTTCCAAGTACGCTTTTGAGCTTGTGGATAAGCAGGCGTTACTGGACTCAGAAGGCAGTGCTGACA
TCGATCAAGTGGATAACTTGCAGGAGGGCCCCAGCAAACCTGTGCACAGCAGTACTAATTACGACGATGC
CATGCAGTTTCTGAAGAAGAAGCGGTATCTTCAAGCTGCAAGTAACAACAGCAGGGAGTACGCACTGAAT
GTGGGCACCATAGCCTCTCAGCCTTCTGTGACACAAGCCGCCGTGGCCAGCGTCATTGATGAAAGCACCA
CAGCATCCATACTGGATTCCCAGGCACTGAATGTGGAGATTAAGAGCAATCATGACAAAAATGTTATCCC
AGATGAGGTCCTGCAGACTCTGCTGGATCATTATTCCCACAAACCTAATGGACAGCATGAGATTTCCTTC
AGCGTTGCAGATACTGAAGTGACTTCTAGCATATCAATCAATTCTTCCGATGTACCTGAAGTCACCCAGT
CAGAGAATGTTGGATCAAGCTCCCAAGCATCCTCATCAGATAAAGCTAACATGTTGCAGGAATACTCCAA
GTTTCTGCAGCAGGCTTTGGACAGAACTAGCCAAAACGATGCCTATTTGAATAGCCCGAGCCTTAACTTT
GTGACTGACAACCAGACCCTTCCAAATCCGCCAGCATTCTCTTCCATAGACAAGCAAGTCTATGCAGCCA
TGCCCATCAATAGCTTTCGATCAGGAATGAATTCTCCACTAAGAACAACTCCAGATAAGTCCCACTTTGG
ACTAATAGTCGGTGACTCACAGCACCCGTTTCCCTTTTCAGGTGACGAGACAAACCACGCCTCTGCCACG
TCAACAGCAGACTTTTTGGATCAAGTCACTTCTCAGAAGAAAGCTGAGGCACAGCCTGTCCACCAGGCTT
ACCAAATGAGCTCCTTTGAGCAGCCCTTCCGTGCTCCATATCATGGATCCAGAGCTGGAATAGCAACTCA
GTTTAGCACTGCCAATGGACAGGTGAACCTTCGGGGACCAGGGACAAGTGCTGAATTTTCAGAATTTCCC
TTGGTGAATGTAAATGATAATAGAGCTGGGATGACATCTTCACCAGATGCCACAACTGGCCAGACTTTTG
GCTAA

Translation (794 aa):
MNIDDKLEGLFLKCGGIDEMQSSRAMVVMGGVSGQSAVSGELQESVLQDRSLPHQEILAADEVLQESEMR
QQDMISHDELMVHEETVKNDEEQMDTHERLPQGLQYALNVPISVKQEITFTDVSEQLMRDKKQVREPVDL
QKKKKRKQRSPAKILTINEDGSLGLKTPKSHVCEHCNAAFRTNYHLQRHVFIHTGEKPFQCSQCDMRFIQ
KYLLQRHEKIHTGEKPFRCDECGMRFIQKYHMERHKRTHSGEKPYQCEYCLQYFSRTDRVLKHKRMCHEN
HDKKLNRCAIKGGLLTSEEDSGFSTSPKDNSLPKKKRQKTEKKSSGMDKESVLDKSDLKKDKNDYLPLYS
SSTKVKDEYMVAEYAVEMPHSSVGGSHLEDASGEIHPPKLVLKKINSKRSLKQPLEQSQTISPLSSYEDS
KVSKYAFELVDKQALLDSEGSADIDQVDNLQEGPSKPVHSSTNYDDAMQFLKKKRYLQAASNNSREYALN
VGTIASQPSVTQAAVASVIDESTTASILDSQALNVEIKSNHDKNVIPDEVLQTLLDHYSHKPNGQHEISF
SVADTEVTSSISINSSDVPEVTQSENVGSSSQASSSDKANMLQEYSKFLQQALDRTSQNDAYLNSPSLNF
VTDNQTLPNPPAFSSIDKQVYAAMPINSFRSGMNSPLRTTPDKSHFGLIVGDSQHPFPFSGDETNHASAT
STADFLDQVTSQKKAEAQPVHQAYQMSSFEQPFRAPYHGSRAGIATQFSTANGQVNLRGPGTSAEFSEFP
LVNVNDNRAGMTSSPDATTGQTFG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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