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Report for CCDS37828.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37828.1 Public Mus musculus 18 Slc27a6 23 108 98 CCDS HistoryNCBI Gene:225579Re-query CCDS DB by CCDS ID:37828.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 37828.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025500.6 ENSMUSP00000025500.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025500.6Link to Ensembl Protein Viewer:ENSMUSP00000025500.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000025500Re-query CCDS DB by Protein ID:ENSMUSP00000025500
Original member Current member NCBI NM_001081072.1 NP_001074541.1 Accepted alive Link to Nucleotide Sequence:NM_001081072.1Link to Protein Sequence:NP_001074541.1Re-query CCDS DB by Nucleotide ID:NM_001081072Re-query CCDS DB by Protein ID:NP_001074541Link to BLAST:NP_001074541.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074541.1 619 E9Q9W4 619 100% 0 0

Chromosomal Locations for CCDS 37828.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 58556464 58556944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 58572029 58572232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 58579793 58579951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 58582171 58582295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 58598549 58598743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 58605038 58605128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 58607624 58607822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 58609170 58609267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 58609794 58609924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 58612179 58612355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1860 nt):
ATGCTCCTGTCATGGCTCACAGGATTGGGGGCTGGACTGCTCTCCCTGCATTTCCTGCAGAAACTTCTGT
TCCCGTATTTCTGGGATGATTTCTGGTACTTGCTGAAGGTGGTGCGCTACGGAATTCAGATGGAGATGTA
CAAACTGAGGGGGGAGCTGGTCACGGTGCTGGATAAGTTCCTGAGCCACACCAGGAAGCAACCACGGAAA
GCCTTCATCATTTATGAGGGGGACGTCTACACCTACGAGGACGTGGACAAGAGGAGTAACAGAATAGCCC
ACGCTCTCCTGAACCACTCCTCGCTGAAAAGGGGGGACGTTGTGGCTTTGTTGATGAGCAACGAGCCCGA
CTTCGTTCATGTGTGGTTTGGCCTGGCTAAACTGGGCTGCGTGGTGGCCTTCCTCAACTCCAACCTTCGC
TTCGATTCCCTCCTACACTGCATCAACACCTGTGAACCCACTGCCGTGGTGGTGGGCGGAGATTTGCTTG
GAAGCATAGAAGAAATACTTCCCAGTCTCCCAAAACACGTCAGAGTTTGGGGAATGAAGGATTCTGTTCC
AGAAGGTATAGATTCACTCCAAGAAAAGCTGAGTCTCGCCTCTGATGAGCCAGTACCACCAAGCCATCAT
GTCACCTCAAGCCTCAAGTCTACTTGCCTCTACATTTTTACCTCTGGAACAACAGGTCTACCCAAAGCAG
CTGTGATTAGCCAGTTGCAAGTGTTGAAGGGATCTGTTGGGCTATGGGCGTTTGGCTGCACAGCTGATGA
CATCATTTATATAACCCTCCCTCTGTACCACAGCTCAGGGTCTCTCCTTGGAATTGGTGGATGTGTTGAG
TTGGGCGCCACGTGTGTGCTAAAGAAGAAATTCTCCGCAAGCCAGTTTTGGAATGATTGCAAGAAGTACA
ACGTGACTGTGTTTCAGTACATTGGGGAACTTTGCCGTTATCTGTGCAAACAGCCTCAGAGAGAAGGGGA
AAAGGACCATCGGGTACGTTTGGCAGTTGGAAACGGTTTGAGCAGTGATGTGTGGAGACAATTTTTAGAC
AGATTTGGAAATATTAAAATGTGTGAACTGTACGGAGCTACCGAAGGAAACATAGTCTTCATGAACCATA
CTGGGAAGATTGGATCTGTCGGGAGAGCAAATTTCTTCTACAGTCTCTTTTTCTCCTTTGAGTTGATCAA
GTATGACTTTCAGAAAGATGAACCATGGCGGAACGGACAAGGCTGGTGCTCCTGTGTGAGAAAAGGAGAA
CCTGGTCTCCTCATTTCTCGTGTGAATAAGAAGAATCCCTTCTTCGGCTACGCTGGCTCGGACACGCACA
CGAAAAGCAAGCTGCTCTTTGATGTGTTTCGGAAGGGAGACGTGTACTTCAACACCGGAGACCTAATGTT
CCAAGACCAGGAGAACTTCGTTTATTTTTGGGACCGTCTTGGAGACACTTTCAGGTGGAAAGGAGAAAAC
GTCGCAACCACAGAGGTCGCTGATGTGCTTGGGAGGTTGGACTTCATCCAGGAAGCAAACGTGTACGGTG
TGCGTGTGCCAGGTTATGAAGGAAAAGCAGGAATGACTTCTGTTATCCTAAAACCAAACAAGTCTTTAGA
CTTAGAAAAAATGTACAACCAAGTGGTGACATCTCTGCCAGCTTACGCCTGCCCACTGTTTTTAAGAATT
CAGGACAAAATGGAAACTACAGGGACATTCAAGCTAAAGAAGCTACAACTGGTGGAAGAAGGATTTGATC
CGCTGAAGATTTCTGACCCGCTTTACTTTATGGATAACTTGAAAAAATCTTATGTCCCATTGACCGAAGA
GATTTATAATCAGATAATGTCAGAGGAAGTTAAACTGTAA

Translation (619 aa):
MLLSWLTGLGAGLLSLHFLQKLLFPYFWDDFWYLLKVVRYGIQMEMYKLRGELVTVLDKFLSHTRKQPRK
AFIIYEGDVYTYEDVDKRSNRIAHALLNHSSLKRGDVVALLMSNEPDFVHVWFGLAKLGCVVAFLNSNLR
FDSLLHCINTCEPTAVVVGGDLLGSIEEILPSLPKHVRVWGMKDSVPEGIDSLQEKLSLASDEPVPPSHH
VTSSLKSTCLYIFTSGTTGLPKAAVISQLQVLKGSVGLWAFGCTADDIIYITLPLYHSSGSLLGIGGCVE
LGATCVLKKKFSASQFWNDCKKYNVTVFQYIGELCRYLCKQPQREGEKDHRVRLAVGNGLSSDVWRQFLD
RFGNIKMCELYGATEGNIVFMNHTGKIGSVGRANFFYSLFFSFELIKYDFQKDEPWRNGQGWCSCVRKGE
PGLLISRVNKKNPFFGYAGSDTHTKSKLLFDVFRKGDVYFNTGDLMFQDQENFVYFWDRLGDTFRWKGEN
VATTEVADVLGRLDFIQEANVYGVRVPGYEGKAGMTSVILKPNKSLDLEKMYNQVVTSLPAYACPLFLRI
QDKMETTGTFKLKKLQLVEEGFDPLKISDPLYFMDNLKKSYVPLTEEIYNQIMSEEVKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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